Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_B04
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 44 2e-05
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 38 0.001
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 33 0.026
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 32 0.079
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.10
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 30 0.24
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.24
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 30 0.32
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 29 0.55
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 29 0.55
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.55
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 0.55
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 1.3
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 2.2
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 3.0
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.0
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 27 3.0
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 27 3.0
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.9
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 5.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 5.2
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.2
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 25 6.8
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 25 9.0
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 9.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 9.0
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 9.0
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/94 (23%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Frame = -3
Query: 609 LEXRAQQDEERMDQLTNQLKEARLLAEDAD---GKSDEVSRKLAFVEDELEVAEDRVKSG 439
L +++ E ++++L + K+ RL A++ D +++++SRK+ +E+ELE + ++
Sbjct: 46 LSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRET 105
Query: 438 DAKISELEEELKVVGNSLKSLEVSEEKANQRVEE 337
K+ + + + + ++SLE + Q++EE
Sbjct: 106 TEKMRQTDVKAEHFERRVQSLERERDDMEQKLEE 139
Score = 38.3 bits (85), Expect = 0.001
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 10/153 (6%)
Frame = -3
Query: 582 ERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEE-- 409
E+++ + EA AE A+ K EV +L+ E E E + ++ ++++ ELEEE
Sbjct: 6 EKINAARAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETK 65
Query: 408 ---LKVVGNSLKSLEVSE-----EKANQRVEEFXXXXXXXXXXXKXXXXXXXXXEKTVKK 253
LK ++ E + E + +E + E+ V+
Sbjct: 66 QLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQS 125
Query: 252 LQKEVDRLEDELGINKDRYKSLADEMDSTFAEL 154
L++E D +E +L D+Y + E+D L
Sbjct: 126 LERERDDMEQKLEEMTDKYTKVKAELDEVHQAL 158
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Frame = -3
Query: 606 EXRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVED---ELEVAEDRVKSGD 436
+ + ++ +ER++ LT + + A+D++GK VS++ A +E+ +L + E+ + +
Sbjct: 164 DKKIKELKERINDLTYDYETLKANADDSEGKQTLVSKREAALEEFQSKLLIRENEINKRE 223
Query: 435 AKISELEEELKV----VGNSLKSLEVSEEKANQR 346
K++ E++LK + N L +E E+ N+R
Sbjct: 224 LKMNGKEDDLKKREKDLENRLLKVEEHEKSLNER 257
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 33.5 bits (73), Expect = 0.026
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = -3
Query: 600 RAQQDEERMDQLTNQLKEARLLAEDADG----KSDEVSRKLAFVEDELEVAEDRVKSGDA 433
R+Q+D++ + +E RLL E A KS EVS L+ E+ ED + S D
Sbjct: 552 RSQRDKQESTE-----RELRLLQEKAASLERNKSSEVSNLLSRYNTEVAHLEDALHSKDR 606
Query: 432 KISELEEELKVVGNSLKSLEVSEEK 358
+++ L ELK N + L +E+
Sbjct: 607 ELANLGVELKSTENRYRQLLQEKEE 631
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.9 bits (69), Expect = 0.079
Identities = 20/79 (25%), Positives = 41/79 (51%)
Frame = -3
Query: 585 EERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEEL 406
+E +++LT+++ + D + DE+ ++L +E+E A++ +K S L E+L
Sbjct: 598 KEEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKE---DSTSKTSNLLEQL 654
Query: 405 KVVGNSLKSLEVSEEKANQ 349
K+ + SL E+ Q
Sbjct: 655 KMTEAEVDSLRKENEENKQ 673
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.5 bits (68), Expect = 0.10
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = -3
Query: 585 EERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEEL 406
EER D L N+L + + D+D + L V DEL+ + S + SE+ ++
Sbjct: 1172 EERSD-LANRLSDMKKSLSDSDNVISVIRSDLVRVNDELDTLKKDKDSLSTQYSEVCQDR 1230
Query: 405 KVVGNSLKSLEVSEEK 358
+ +SLK E S K
Sbjct: 1231 DDLLDSLKGCEESFNK 1246
Score = 27.1 bits (57), Expect = 2.2
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 11/161 (6%)
Frame = -3
Query: 606 EXRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAF----VEDELEVA---EDRV 448
E QQ+ +D + +L + E + EV+ KL+ + L VA D++
Sbjct: 825 ENLTQQNMTLIDNV-QKLMHKHVNQESKVSELKEVNGKLSLDLKNLRSSLNVAISDNDQI 883
Query: 447 KSGDAKISE----LEEELKVVGNSLKSLEVSEEKANQRVEEFXXXXXXXXXXXKXXXXXX 280
+ A++S+ LE+E + + LKSLE ++ + EE K
Sbjct: 884 LTQLAELSKNYDSLEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKS 943
Query: 279 XXXEKTVKKLQKEVDRLEDELGINKDRYKSLADEMDSTFAE 157
K + Q+E+ L++E S+ ++D T ++
Sbjct: 944 SDLGKKLTARQEEISNLKEENMSQSQAITSVKSKLDETLSK 984
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 30.3 bits (65), Expect = 0.24
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = -3
Query: 624 RMCKVLEXRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVK 445
+M + +E R + E LT L+E+ E D K +++ + ++DE + +
Sbjct: 458 QMTREMEERVSEVERTF--LTKLLEESAQGIEYTDQKLEKMGGWMKKLQDENSEKTETIA 515
Query: 444 SGDAKISELEEELK-VVGNSLKSLEVSEEKANQ 349
+ I EL EEL+ + S+K +++ NQ
Sbjct: 516 QLEQIIEELHEELRSLEEESIKESSATQQNENQ 548
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.24
Identities = 31/153 (20%), Positives = 66/153 (43%), Gaps = 2/153 (1%)
Frame = -3
Query: 609 LEXRAQQDEERMDQLTNQLKEARLLAEDADGKSD--EVSRKLAFVEDELEVAEDRVKSGD 436
L+ ++ E+ + N+L+ + A DADGK++ + +++ + + E +V++
Sbjct: 1489 LKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLEKEIHELRSDKEGLVQQVQNLS 1548
Query: 435 AKISELEEELKVVGNSLKSLEVSEEKANQRVEEFXXXXXXXXXXXKXXXXXXXXXEKTVK 256
A+++ L E G SLE ++E A R + + + V
Sbjct: 1549 AELAALREHSPTQG----SLENADEIARLRSQ---LESTKQYYEKEKETEILAARSELVA 1601
Query: 255 KLQKEVDRLEDELGINKDRYKSLADEMDSTFAE 157
+ +K + LE++L R K L ++ +E
Sbjct: 1602 EKEKTKEELENQLNEKSQRIKELEEQAQKNSSE 1634
Score = 28.3 bits (60), Expect = 0.97
Identities = 17/83 (20%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = -3
Query: 579 RMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDA----KISELEE 412
R++QLTN+L+ + ++ + + K +E L + +++ + S + K+++LE+
Sbjct: 671 RLEQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSLALEKLNDLEK 730
Query: 411 ELKVVGNSLKSLEVSEEKANQRV 343
L + S L+ S + +++
Sbjct: 731 SLVLSERSKDELDESYKSLQEQL 753
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 29.9 bits (64), Expect = 0.32
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = -3
Query: 504 VSRKLAFVEDEL-------EVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQR 346
+ R+L VEDEL V + R + + +IS+L + L+ N+++ L++ EK+ ++
Sbjct: 519 LQRRLRMVEDELHEAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLDLEKSKKK 578
Query: 345 VEE 337
E+
Sbjct: 579 NED 581
Score = 27.1 bits (57), Expect = 2.2
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Frame = -3
Query: 585 EERMDQLTNQLKEARLLAEDADGK----SDEVSRKLAF---VEDELEVAED-RVKSGDAK 430
+E D +TNQ + A A + + E R A V +E++V D RV++ AK
Sbjct: 644 KEDADFITNQYQNASTFAAEQSKEVAKLQAECKRLQAINSKVMEEVKVYNDSRVEALLAK 703
Query: 429 ISELEEELKVV 397
+S LEE LK++
Sbjct: 704 VSSLEETLKIL 714
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 29.1 bits (62), Expect = 0.55
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 504 VSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 343
VSR + + E+ E +K +SELE EL+ S L++ EK +++
Sbjct: 728 VSRSVEDKKKEIGHYESLIKEKQPHLSELEMELRNFVKSRDELQIQVEKVEEKI 781
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.55
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = -3
Query: 459 EDRVKSGDAKISELEEELKVVGNSLKSLEV---SEEKANQR 346
E+R+K+ DA I EE+ K + ++++SLE+ EKAN++
Sbjct: 47 EERIKACDAGIQTSEEQKKELEHTMQSLEMIINVLEKANEK 87
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.55
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 564 TNQLKEARLLAEDADG---KSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVG 394
+N L E L E+ +G K D ++++ + +ELE R+KS + +SEL +
Sbjct: 516 SNDLNEIHDLREENEGLTLKIDSITKEKDRLINELE---QRIKSYEVNVSELNGTIDEYR 572
Query: 393 NSLKSLE 373
N LK E
Sbjct: 573 NKLKDKE 579
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 29.1 bits (62), Expect = 0.55
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = -3
Query: 600 RAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISE 421
R + ER+ L NQ+ A E + + LA + E+ D + + K+S
Sbjct: 896 RVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSS 955
Query: 420 LEEELKVVGNSLKSLE 373
++++ + + + K LE
Sbjct: 956 IKKDEQTISSKYKELE 971
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = -3
Query: 522 DGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 343
+ + + V R L E++L++ + + ++ + E+ N L+SLE + + R+
Sbjct: 844 ESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESLEELQHEVATRI 903
Query: 342 EE 337
E+
Sbjct: 904 EQ 905
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/95 (23%), Positives = 45/95 (47%)
Frame = -3
Query: 627 NRMCKVLEXRAQQDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRV 448
N ++L QQ++E TN +K L + +S ++SR++ F + + + +
Sbjct: 278 NHSLELLRVEKQQNDE---DYTNIMKSKVAL----ELQSSQLSRQIEFSKKDESSKLNIL 330
Query: 447 KSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 343
++KISE E EL + ++ + N+R+
Sbjct: 331 SELESKISEKENELSEILPKYNAIVSEADDLNKRI 365
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/84 (21%), Positives = 35/84 (41%)
Frame = -3
Query: 423 ELEEELKVVGNSLKSLEVSEEKANQRVEEFXXXXXXXXXXXKXXXXXXXXXEKTVKKLQK 244
E+E ELK + K +E+S E R+ + + + KL+
Sbjct: 422 EMENELKAKLSRKKEIEISLESQGDRMSQLLANITSINERKENLTDKRKSLWREEAKLKS 481
Query: 243 EVDRLEDELGINKDRYKSLADEMD 172
++ ++D+L ++ K+L MD
Sbjct: 482 SIENVKDDLSRSE---KALGTTMD 502
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 480 EDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 343
E E E A K D+K S++EEE + ++ E+ EEK N+ +
Sbjct: 15 ETESESANGDTKQDDSKKSQVEEE----EDGIEESELGEEKDNKTI 56
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 585 EERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVK 445
+ER+D LTN L E LL E K DE ++ ++L+ E R K
Sbjct: 224 QERLDILTNLLDELTLLYE--TDKFDETMKEAILSFEDLKEQEIRRK 268
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 587 TRSVWTSSPTN*KRPVSSPRTLTENPTRFRENWPSLKTNSKSPKTVSSLVTLRSQS 420
T VW+++ PVS+P T + + F ++P+ + S S SS S S
Sbjct: 122 TAPVWSNTSV----PVSTPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYS 173
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = -3
Query: 570 QLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGN 391
+L + +EA ++ + + D K +E+ E + ++K+ + + LEE K +
Sbjct: 166 ELAKKFEEASQISNKLEKEKDATGSKS--IEELWEEHQKQLKNAGLEPASLEEYQKQWED 223
Query: 390 SLKSLEVSEEKANQRVEEF 334
LKS +S++ V F
Sbjct: 224 FLKSNNISDDPYTSSVNSF 242
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 518 ENPTRFRENWPSLKTNSKSPKTVSSLVTLRSQSLKKN*RSSVTPLNLSK 372
EN R ++KT K +T SL+ +S++LKK R V + +K
Sbjct: 7 ENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAK 55
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 602 TGHSRTRSVWTSSPTN*KRPVSSPRTLTENP-TRFRENWPSLKTNSKSPKTVSS 444
+G RT+S+ SP ++P T + P T +E+W + S ++ ++
Sbjct: 406 SGSERTKSLSKESPVEPEKPALPDATSSSTPTTENKESWTNQGIKSSQQRSANA 459
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -3
Query: 522 DGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 343
+ K + +S K A E E ++ K K EEE V + E E+K N V
Sbjct: 7 NNKDESISTKNALEEKSNETKDETSKR---KHDPAEEE-SAVSTKVSKSEPLEDKGNAEV 62
Query: 342 EEF 334
+EF
Sbjct: 63 KEF 65
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = -3
Query: 510 DEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRVEE 337
D+ + + F E + E A + + ++ +LEE+++ L++++ S + QR+E+
Sbjct: 585 DQQTTEAPFEEPD-EPAHEPTEEEQEEMRKLEEKIESTKYGLETIQTSGKTIKQRIEQ 641
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 563 PTN*KRPVSSPRTLTENPTRFRENWPSLKTNSKSPK 456
P+N K PV R+ + R ++NW + S K
Sbjct: 229 PSNVKSPVQQHRSFVSSSARAKKNWGRQSNSPNSNK 264
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 6.8
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = -3
Query: 570 QLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGN 391
Q+T L++ + L + + + D + + + ++ L AED KS + S+ +E+LK
Sbjct: 307 QMTETLEKYKSLDFNMEKEGDVIQQLKSSIKKPLSGAEDEQKS-RSMFSKNDEKLK---- 361
Query: 390 SLKSLEVSEE 361
KSLE+ E+
Sbjct: 362 --KSLELMED 369
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 536 SPRTLTENPTRFRENWPSLKTNSKSP 459
+P LTE+ N PS + NSKSP
Sbjct: 630 TPEDLTEDVPFLHFNVPSSRPNSKSP 655
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 552 KEARLLAEDADGKSDEVSRKLAFVEDE-LEVAEDRVKSGDAKISELEEELKVVGNSLKSL 376
+E+ AE K+ + +DE L + R+K + EEE+ VVG+ LKS
Sbjct: 225 EESEQAAEGDTAKNSGTDAQAPLSDDEWLRLHRTRIKE-----KQPEEEVSVVGDELKSF 279
Query: 375 E 373
+
Sbjct: 280 D 280
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = +1
Query: 58 CVCGSGAAYVCVHVLFVCVCGL-YVECESLVTSQL 159
C+C S Y CV F + Y C S + S L
Sbjct: 313 CICQSNYHYACVEAPFAPFSDIHYWTCNSCIPSSL 347
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 531 EDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSE-EKA 355
E+ D D R F E E ++ SG ++ +EL+EE NS+K + + E EK
Sbjct: 59 EERDAHLDRFRRDSTF---ESETSDHEDFSGGSE-NELDEETTKNANSIKKISLEEVEKQ 114
Query: 354 NQRVE 340
+ ++
Sbjct: 115 RKAIK 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,832
Number of Sequences: 5004
Number of extensions: 31252
Number of successful extensions: 225
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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