Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_B01
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    36   0.004
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...    28   1.4  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    26   4.4  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.4  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   4.4  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   5.8  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   7.7  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 617 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 480
           VY+PD          Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +3

Query: 396 LWYFRSGRRFGSLSNRYQSG*VQFDLFSGVSQLGRLSGAEDRVLWL 533
           L Y   G+ +  ++    +G ++   F GV +LG + G   + +W+
Sbjct: 26  LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWI 71


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = -3

Query: 262 SFQCSSDGEVGPQVVPEARLQLPTHTAQ------VEEASPQATPPPTVD 134
           S     DG  G    P+ + Q  T +AQ      VE+ +PQ T P  VD
Sbjct: 360 SVATQKDGIPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQTTQPTQVD 408


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 652 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 512
           S   H    +    + +++   +P+P  YR    +  TLSN++T  S
Sbjct: 45  SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 177 TCAVCVGNCSRASGTTCGPTSPSE 248
           TCA+C+  C +     C   S  E
Sbjct: 83  TCAICIRQCHKCESNVCSMCSKQE 106


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +3

Query: 153 VACGDASSTC-AVCVGNCSRASGTTCGPTSPSEEHWKEGGC 272
           +ACG A  TC AV  G    A      P   +E H   G C
Sbjct: 165 LACGSAIETCTAVVTGQVKNAFAVVRPPGHHAEPHKPGGFC 205


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 201 CSRASGTTCGPTSPSEEHWKEGGCRHSGW 287
           C+R +      T P  E+WKE      GW
Sbjct: 622 CTRGNQVQAFYTLPEYEYWKEANNNGRGW 650


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 560 QENEVYYPQQPENPIFSPTQATELADPTE 474
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,366
Number of Sequences: 5004
Number of extensions: 42070
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)