Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A22
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    25   2.2  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   3.9  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   3.9  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    24   5.2  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    23   9.0  

>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 229 RSTTAFRVVNFELYAKPNI-VIMSIGLTCFGL 137
           R    +RV N E+Y +PN  V+  +G   +G+
Sbjct: 3   RRHRVYRVFNQEMYVEPNFKVVKELGQGAYGI 34


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 208 VVNFELYAKPNIVIMSIGLTCFGLALG 128
           V+N +LYA P + + S G+  + + +G
Sbjct: 201 VINGKLYAGPEVDVWSCGIVLYVMLVG 227


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +3

Query: 105 VCRMSAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVVDRIDRKPSPGLSSCGFDIVY 284
           V R+++ Y     +HV  +L+   LG+A    L  ++  +  ID     G+S      +Y
Sbjct: 515 VTRINSAYSNIASRHVPVILLRQKLGYAQFLALMMISDAL--IDNSLREGISLTSHQFIY 572


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 325 EFGRPMIHRKYHIL*TMSKPHDDKPGEGLR 236
           ++ RP+++ KYH L  + K  DD     +R
Sbjct: 51  KYVRPLLNLKYHHLIKLHKGSDDSVQSSIR 80


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 7/31 (22%), Positives = 18/31 (58%)
 Frame = -1

Query: 267 HTMINLARVCDLCDQLQHLEWSILNYTQNPI 175
           H +I+++++  +  +     +  +NY +NPI
Sbjct: 458 HNIISMSKIAKIMGKTMEQLYGTVNYKKNPI 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,904
Number of Sequences: 5004
Number of extensions: 18571
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)