Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A22
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   6.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   8.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 166 MSIGLTCFGLALGYIADMRQTXEA 95
           M  G TC+ L LG+  ++ Q+ ++
Sbjct: 360 MISGATCYALFLGHATNLIQSLDS 383


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 166 MSIGLTCFGLALGYIADMRQTXEA 95
           M  G TC+ L LG+  ++ Q+ ++
Sbjct: 328 MISGATCYALFLGHATNLIQSLDS 351


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -2

Query: 170 HNEHRTDMLWFGSRIHCR 117
           HN+ +T ++W     H R
Sbjct: 211 HNDDKTFLVWCNEEDHLR 228


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 159 MLIMTILGFAYSSKLTTLNAVVDRIDRKPSPGLSSCGFDIVYKI 290
           ML   I+GF       T   V++ +        S CG   VYK+
Sbjct: 492 MLFSDIVGFTEICSTATPMMVINMLQNLYEQFDSFCGQLDVYKV 535


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,649
Number of Sequences: 438
Number of extensions: 1323
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)