Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A21
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    31   0.10 
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    29   0.55 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   2.9  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   8.9  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   8.9  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   8.9  

>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 55  SYNITDRLP*PEV*ESCLFSSRKQNAIV--RXNLDDPDRIAESQNNNYDVEHIGLSTIRM 228
           S N+T+  P PEV  +  F S   N I   +  L D      +Q+N++D  H   +T+R 
Sbjct: 703 SVNLTEEAPKPEVDSTPRFPSFTSNGITTDKPTLPDTTSSVPTQHNSFDAMH---NTLRS 759

Query: 229 P 231
           P
Sbjct: 760 P 760


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 281 IKGRRPIIFAIYPXTIQPIASANPKVII-TKPXDPVPRTQDTKAS 412
           +K + P +  I    + PI+SAN  V+   +P  P+P T+   A+
Sbjct: 394 LKSKSPSVSNILSNQLSPISSANNDVMARLQPKSPIPATKSYSAT 438


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 313 YSKDNRSSAFNMYSYFNKHCYFDDVINV 230
           Y+KDN+S+  N+ ++  K C  +  INV
Sbjct: 109 YAKDNQSALANLINFILKCCGCNRAINV 136


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 130 HFVSWKRRGSFLKLQAMGVGRLYCSLRD--LSIPQNQ 26
           H VSW  +G       +GV RL     D  ++IP NQ
Sbjct: 716 HDVSWGTKGDHFTNNDLGVARLLQKGADVEIAIPTNQ 752


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1008

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 281  IKGRRPIIFAIYPXTIQPIASANPKVIITKPXDPVPRTQDTKASS 415
            ++  +P++    P +I     + P  ++TK  D +P  Q TKA +
Sbjct: 920  VENPKPVVKDEGPVSIVEDEESTP--VVTKKEDSIPVAQSTKADA 962


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 233  VNNVVKIAMFIK-VAIHIKGRRPIIFAIYPXTIQPIASA--NPKVIITKPXDPVPRTQDT 403
            VN + K    I  +  ++K + P  +AI P  I P+     NP   I KP  P P T   
Sbjct: 809  VNGLKKYRKLIHDIREYLKTKLPS-YAI-PSVIVPLHKMPLNPNGKIDKPALPFPDTSQL 866

Query: 404  KASSTGH 424
             A+S  H
Sbjct: 867  AAASRSH 873


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,519
Number of Sequences: 5004
Number of extensions: 37859
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)