Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A21
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0806 - 23336329-23336511,23336658-23336781,23336817-233368...    40   0.002
12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425...    36   0.015
06_01_0295 - 2154069-2155483,2155561-2155708                           30   0.96 
01_03_0053 + 12050631-12051620                                         30   0.96 
03_02_0035 + 5176365-5176501,5176676-5176775,5176852-5176887,517...    27   6.8  
07_01_0232 + 1701612-1701753,1701848-1703280                           27   8.9  
05_03_0636 + 16448965-16449033,16449986-16450093,16451195-164512...    27   8.9  

>12_02_0806 -
           23336329-23336511,23336658-23336781,23336817-23336879,
           23336880-23336992,23337212-23337302,23337397-23337461,
           23338279-23338323,23338500-23338692,23339381-23339544,
           23339645-23339836
          Length = 410

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = -2

Query: 225 PNGGQ--AYVLYIIIVILGFSDSIWIVQIXAYYSILFPGREEAAFSNFRLWESVGYIVAY 52
           P GG   A V   I  + G  D +   Q+ A   +LF   +EAAF+ +R+W+S    V +
Sbjct: 310 PMGGLLGAAVPLFIGALWGVGDGVLHTQLSALLGLLFEDVKEAAFAQWRVWQSGAIAVIF 369

Query: 51  VISPYLRTSVKTDLM 7
            +SP +       LM
Sbjct: 370 FLSPNITLQAMLILM 384


>12_02_0807 -
           23341971-23342153,23342300-23342397,23342451-23342521,
           23342522-23342634,23342853-23342943,23343037-23343272,
           23343915-23343959,23344113-23344226,23344306-23344369,
           23345036-23345059,23345320-23345483,23345598-23345795
          Length = 466

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 177 GFSDSIWIVQIXAYYSILFPGREEAAFSNFRLWESVGYIVAYVISPYLRTSVKTDLM 7
           G  D +   Q+ A   +LF   +EAAF+  ++W+S    V + +SP +       LM
Sbjct: 384 GVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQSGAIAVIFFLSPNITLQAMLILM 440


>06_01_0295 - 2154069-2155483,2155561-2155708
          Length = 520

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -2

Query: 219 GGQAYVLYIII---VILGFSDSIWIVQIXAYYSILFPGREEAAFSN-FRLWESVGYIVAY 52
           GG +  +Y++I   V+LG         +  Y S + P R   AFSN F+L   VG + A 
Sbjct: 132 GGASVDIYMVILGRVLLGVGLGFANQAVPLYLSEMAPSRWRGAFSNGFQLSVGVGALAAN 191

Query: 51  VIS 43
           VI+
Sbjct: 192 VIN 194


>01_03_0053 + 12050631-12051620
          Length = 329

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 231 WHPNGGQAYVLYIIIVILGFS-DSIWIVQIXAYY 133
           W P GG A +L  I V+ GF+ +S W VQ+ A +
Sbjct: 48  WVPAGGDAPLLGAIAVVHGFTGESSWTVQLTAVH 81


>03_02_0035 +
           5176365-5176501,5176676-5176775,5176852-5176887,
           5177081-5177131,5177323-5177446,5177955-5178080,
           5178292-5178449
          Length = 243

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 227 CHVN-NVVKIAMFIKVAIHIKGRRPIIFAI 313
           CH   +++K  +FI  A  +KG+RP IF +
Sbjct: 71  CHAGASIIKEFVFIDGAKRLKGKRPDIFVV 100


>07_01_0232 + 1701612-1701753,1701848-1703280
          Length = 524

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 186 VILGFSDSIWIVQIXAYYSILFPGREEAAFSN-FRLWESVGYIVAYVIS 43
           V+LG         +  Y S + P     AFSN F+L  SVG  VA +I+
Sbjct: 145 VLLGVGVGFGNQAVPLYLSEMAPPSRRGAFSNGFQLCVSVGAFVAQLIN 193


>05_03_0636 +
           16448965-16449033,16449986-16450093,16451195-16451236,
           16451634-16451696
          Length = 93

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 210 AYVLYIIIVILGFSDSIWIVQIXAYYSILFPGREEAAFSNFRLW 79
           A + Y+ +++ GF    W+ ++  Y  +L  G   A+FS    W
Sbjct: 6   AAICYVFLLLKGFGTLRWLTEVALYEQLL--GAAIASFSTNTEW 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,060,330
Number of Sequences: 37544
Number of extensions: 245045
Number of successful extensions: 537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)