Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A21
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   3.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   5.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -2

Query: 189 IVILGFSDSIWIVQIXAYYSILFPGREEAAFSNFRL----WESVGYI 61
           +V  G S   WI       S+  PG   A F+N++L    W+ V ++
Sbjct: 538 VVGSGLSHGNWIYPA----SMTIPGSNSAVFTNYKLYWRYWQGVDWL 580


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 352 WIG*CNRLYRXWIYSKDNR 296
           W+G CN L    IY+  NR
Sbjct: 414 WLGYCNSLLNPIIYATLNR 432



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 274 SYFNKHCYFD 245
           S+   HCYFD
Sbjct: 241 SHLEAHCYFD 250


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 355 FWIG*CNRLYRXWIYSKDNRSSAFNMYSYFNKHCY 251
           FW+G CN      IY+  ++   F   S   K C+
Sbjct: 48  FWLGYCNSAINPCIYALFSKDFRFAFKSIICK-CF 81


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 190 NCYFGIQRFDLDRPDXCVL 134
           +CY+ I    ++RPD  VL
Sbjct: 322 DCYYCISGAPIERPDHAVL 340


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 355 FWIG*CNRLYRXWIYSKDNRSSAFNMYSYFNKHCY 251
           FW+G CN      IY+  ++   F   S   K C+
Sbjct: 496 FWLGYCNSAINPCIYALFSKDFRFAFKSIICK-CF 529


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 151 DDPDRIAESQNNNYDVEHIGLST 219
           +DP    ++QNNN+   H  L T
Sbjct: 109 NDPKNQYKNQNNNHYTSHQHLRT 131


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 123 FPGREEAAFSNFRLWESVGYIV 58
           FP  E+  F  F  W   GY V
Sbjct: 152 FPFDEQTCFMKFGSWTYDGYTV 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,064
Number of Sequences: 438
Number of extensions: 2511
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)