Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A20
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    30   0.16 
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    26   3.4  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.4  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    26   3.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   4.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   5.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   7.8  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   7.8  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   7.8  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 30.3 bits (65), Expect = 0.16
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +3

Query: 216 ISYNKMN*FFINQLRLQLIPLHSVHSNIVLVHFEHNLILXVLFSARPPSRGLVPLLTTDT 395
           + Y K +      +  + + LH V     L  F HNL   +LF        LV  L+T+T
Sbjct: 469 MKYKKSDSTIFEYIEFEFVDLHEVAVGTPLQQFVHNLSQKLLF--------LVFQLSTNT 520

Query: 396 *CYLHKNN 419
            CYL   N
Sbjct: 521 NCYLDSKN 528


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 349 PARRLADSCRCSLLILNVIFIKIIKCNNNA 438
           PAR + +   C+L+ LN    +I +CNN A
Sbjct: 138 PAREITEFTGCNLVGLNNNDYQISRCNNYA 167


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 126 RAHRQYWGPPPP 91
           R HR Y+ PPPP
Sbjct: 91  RGHRAYYAPPPP 102


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = -3

Query: 135 RANRAHRQ--YWGPPPPP 88
           + N  H+Q  YW PPPPP
Sbjct: 35  KPNVQHQQPTYWYPPPPP 52


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -3

Query: 156 HRPA--RSVRANRAHRQ-YWGPPPPPANRIWDHLFLHKLISPC 37
           HRP      R  RA+R+ YWG P P    +   + L   +  C
Sbjct: 54  HRPDGYHDGRGRRAYRKHYWGHPTPIEEMLPSQMELETAVKSC 96


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +3

Query: 72  PRSGLPAAGAAPNTVGEPGLHAQTAQVCGRVTQCEASSI 188
           PR    A GA P    +PGL   ++   G +    A+ +
Sbjct: 332 PRPSAGAGGANPPAASQPGLLGGSSNSAGPIAAATAAGV 370


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 325 KLCSKCTRTILECTECNGMSC 263
           K C KC+ TI +   CN M+C
Sbjct: 289 KECPKCSTTIEKNGGCNHMTC 309


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 102 PPPPPANRIW 73
           PPPPP+N  W
Sbjct: 310 PPPPPSNDFW 319


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -3

Query: 195 NKQSKTLHTASPAHRPARSVRANRAHRQYWGPPPPP 88
           ++ S  L    P+ +P RS+           PP PP
Sbjct: 99  SRNSLNLDMKDPSEKPRRSLPTAAGQNNIGSPPTPP 134


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 60  LHKLISPCSHRVPV 19
           L KL+SPC H +PV
Sbjct: 165 LPKLLSPCLHPIPV 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,145
Number of Sequences: 5004
Number of extensions: 36592
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)