Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_A19
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 115 5e-26
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 115 5e-26
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 111 7e-25
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 31 1.5
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 30 2.0
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 30 2.7
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 29 4.7
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 29 6.2
07_03_0533 - 19178296-19178516,19178790-19178847,19179315-191793... 29 6.2
01_06_1261 - 35826513-35828941,35829201-35829294 29 6.2
07_03_1086 + 23858419-23859423,23859527-23859610 28 8.1
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 115 bits (276), Expect = 5e-26
Identities = 58/107 (54%), Positives = 73/107 (68%), Gaps = 3/107 (2%)
Frame = -1
Query: 325 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 146
R AA A KK KS+++LDVKPWDDETDM LE+AVR++ +GLLWGA+KLVP+
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVG 182
Query: 145 YGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAXNKV 14
YGI KLQI + DD VS+D L E+ E +Y+QS DI A NK+
Sbjct: 183 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 115 bits (276), Expect = 5e-26
Identities = 58/107 (54%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Frame = -1
Query: 325 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 146
R AA A KK KS+++LDVKPWDDETDMA LE+AVR++ +GLLWGA+KLVP+
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVG 198
Query: 145 YGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAXNKV 14
YGI KLQI + DD VS+D L E+ E +++QS DI A NK+
Sbjct: 199 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 111 bits (267), Expect = 7e-25
Identities = 55/101 (54%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Frame = -1
Query: 307 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKL 128
+K + K KS+++LDVKPWDDETDM LE+AVRS+ +GL WGA+KLVP+ YGI KL
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKL 183
Query: 127 QISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAXNKV 14
QI + DD VS+D L EE E ++VQS DI A NK+
Sbjct: 184 QIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224
>03_05_0432 - 24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 592 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSS-SITSDCIQ 446
EL K+ ++E EN+ LK ++ ++ SLQ V LE + S+ +DC+Q
Sbjct: 1090 ELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQTLSLANDCLQ 1139
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = -1
Query: 592 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQVQSEKPAAA 419
ELS KV LE E DL++A+ D + ++ + +E +T D ++ +E+ AAA
Sbjct: 616 ELSAKVEQLEQELSDLRQALLDKQEQEQAMLQVLMRVEQEQKVTEDA-RIFAEQDAAA 672
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -1
Query: 661 EKAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETL 482
E A + + ++ +A EL ++LEN +LKK ++ L S ++ ++ L
Sbjct: 574 ELAQCQEVQRLTMEIQMANEKLNELKQTKVNLENAVSELKKEVESLTEQNRSSELLIQEL 633
Query: 481 -ESSSSITSDCIQVQSEKPAAAST 413
+ +S+T ++Q+E + ST
Sbjct: 634 RDEINSLTDSRNELQNEIQSLRST 657
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -1
Query: 598 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQVQSE 434
N+E K+ SL+ EN+DL + RN ++ ++ ++T ++ T+ + +Q E
Sbjct: 1277 NSEYQQKIYSLQEENEDLTR-----RNQLMEKELDLKTSQNKDENTNKQVSLQDE 1326
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 571 SLENENKDLKKAIDDLRNLVISLQVRVETLESSSSI 464
SLE++ K+LK D+LR+ L+V ETLE I
Sbjct: 146 SLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKI 181
>07_03_0533 -
19178296-19178516,19178790-19178847,19179315-19179370,
19179527-19179646,19180446-19180599,19180911-19181018,
19181134-19181197,19181342-19181518,19181679-19181824,
19181912-19181941,19181999-19182150,19182266-19182347
Length = 455
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 71 FLCKPINRNLIIFNNTGNLQLMDTISQR 154
FLCK +R ++ N ++L DT SQR
Sbjct: 236 FLCKDDHRKIVACTNNHQVRLYDTASQR 263
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = -1
Query: 658 KAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 479
K +ES S+ +V LAG + E+ KVISLE I+ ++N LQ R+++LE
Sbjct: 313 KQKFESSSEASAVH-LAGQVD-EIVDKVISLEIAASSQNAQINRMKNEADELQKRLDSLE 370
Query: 478 SSSS 467
+
Sbjct: 371 DEKA 374
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 148 AYGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSVDIAA 26
A GIH+L +SC E +I L E+E + S+ AA
Sbjct: 44 AAGIHRLLLSCAAEASDGTISSLVAELESPSSSLDSLRRAA 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,494,427
Number of Sequences: 37544
Number of extensions: 332855
Number of successful extensions: 858
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -