Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_A19
(847 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95559-20|CAB63360.2| 263|Caenorhabditis elegans Hypothetical p... 149 2e-36
L25599-6|AAA28051.1| 213|Caenorhabditis elegans Hypothetical pr... 137 1e-32
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 32 0.59
AC024805-5|AAK39339.1| 494|Caenorhabditis elegans Hypothetical ... 29 3.1
AC024805-4|ABA00170.1| 318|Caenorhabditis elegans Hypothetical ... 29 3.1
AC024805-3|AAK39338.1| 801|Caenorhabditis elegans Hypothetical ... 29 3.1
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF016440-6|AAN84798.1| 525|Caenorhabditis elegans Hypothetical ... 28 7.3
AF016440-5|AAB65904.2| 535|Caenorhabditis elegans Hypothetical ... 28 7.3
AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical... 28 7.3
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 28 9.6
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 28 9.6
AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical ... 28 9.6
>Z95559-20|CAB63360.2| 263|Caenorhabditis elegans Hypothetical
protein Y41E3.10a protein.
Length = 263
Score = 149 bits (362), Expect = 2e-36
Identities = 88/196 (44%), Positives = 112/196 (57%), Gaps = 1/196 (0%)
Frame = -1
Query: 598 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQVQSEKPAAA 419
N E V L E+ L K +DDL +LV LQ+++ TL + + + + PAAA
Sbjct: 72 NKEGGEDVSKLREEHSALAKKVDDLASLVAELQLQLSTLRQGQTSS---VAAPAAAPAAA 128
Query: 418 STXXXXXXXXXXXXXXXXXXXXXXXXXXXXERLAAYNAKKAKKPVLIAKSNIILDVKPWD 239
RLAAY AKKA K IAKS++ILDVKPWD
Sbjct: 129 KEEAAGDDDFDLFGSEDEEEDEEKKKVVEE-RLAAYAAKKATKAGPIAKSSVILDVKPWD 187
Query: 238 DETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKN 59
DETD+ +E+ VRSI DGL+WG AKL+P+ YGI KLQI V+ED KVS+D L E+I +
Sbjct: 188 DETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGD 247
Query: 58 -EDYVQSVDIAAXNKV 14
ED+VQSVDI A NK+
Sbjct: 248 FEDHVQSVDIVAFNKI 263
>L25599-6|AAA28051.1| 213|Caenorhabditis elegans Hypothetical
protein F54H12.6 protein.
Length = 213
Score = 137 bits (331), Expect = 1e-32
Identities = 68/105 (64%), Positives = 82/105 (78%), Gaps = 1/105 (0%)
Frame = -1
Query: 325 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 146
RLAAY KKAKK IAKS++ILDVKPWDDETD+ +E+ VRSI DGL+WG AKL+P+
Sbjct: 109 RLAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIG 168
Query: 145 YGIHKLQISCVVEDDKVSIDWLTEEIEKN-EDYVQSVDIAAXNKV 14
YGI KLQI V+ED KVS+D L E+I + ED+VQSVDI A NK+
Sbjct: 169 YGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIVAFNKI 213
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -1
Query: 172 GAAKLVPLAYG-IHKLQISCVVE-DDKVSIDWLTEEIEKNEDYVQSVDIAAXNKV 14
G K P A G I + +SC+ E DD V +WL E IE+ EDY + + I A + +
Sbjct: 288 GLKKYAPGALGPILETLLSCMTEMDDDVLNEWLNE-IEEEEDY-EDIPIIAESAI 340
>AC024805-5|AAK39339.1| 494|Caenorhabditis elegans Hypothetical
protein Y51H7C.6b protein.
Length = 494
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -1
Query: 607 GVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQVQSE 434
G+ T L+ ++ +EN K L A+ ++ L ++ RV L+ + + C+Q+ +
Sbjct: 82 GLAVTRLNNHMLVVENSAKQLTSALKNISVLADTISGRVSALDVAKTRVVGCLQLAGD 139
>AC024805-4|ABA00170.1| 318|Caenorhabditis elegans Hypothetical
protein Y51H7C.6c protein.
Length = 318
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -1
Query: 607 GVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQVQSE 434
G+ T L+ ++ +EN K L A+ ++ L ++ RV L+ + + C+Q+ +
Sbjct: 82 GLAVTRLNNHMLVVENSAKQLTSALKNISVLADTISGRVSALDVAKTRVVGCLQLAGD 139
>AC024805-3|AAK39338.1| 801|Caenorhabditis elegans Hypothetical
protein Y51H7C.6a protein.
Length = 801
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -1
Query: 607 GVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQVQSE 434
G+ T L+ ++ +EN K L A+ ++ L ++ RV L+ + + C+Q+ +
Sbjct: 82 GLAVTRLNNHMLVVENSAKQLTSALKNISVLADTISGRVSALDVAKTRVVGCLQLAGD 139
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
protein C08H9.2 protein.
Length = 1220
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = -1
Query: 604 VPNTELSTKVISLENENKDLKKAIDDLRNLVISLQ 500
+PN E ++ I +E + + +KKA+ ++R +V ++
Sbjct: 454 IPNEETNSDEIVVEGKKEGVKKAVTEIRAIVTKIE 488
>AF016440-6|AAN84798.1| 525|Caenorhabditis elegans Hypothetical
protein F29G9.2b protein.
Length = 525
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = -1
Query: 580 KVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDC 452
K++S+E + ++ +D+LR L + L + ++L S+++ DC
Sbjct: 200 KMVSIEEKLCTKEREVDELRQLCMYLDEQRQSLMSNAAANVDC 242
>AF016440-5|AAB65904.2| 535|Caenorhabditis elegans Hypothetical
protein F29G9.2a protein.
Length = 535
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = -1
Query: 580 KVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDC 452
K++S+E + ++ +D+LR L + L + ++L S+++ DC
Sbjct: 210 KMVSIEEKLCTKEREVDELRQLCMYLDEQRQSLMSNAAANVDC 252
>AC025727-10|AAK66029.1| 707|Caenorhabditis elegans Hypothetical
protein Y73E7A.8 protein.
Length = 707
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = -1
Query: 619 ATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVET 485
A + G+ + + + + ++ + +L I+DLR+L+ + R+E+
Sbjct: 635 ARIFGIKTSSIPEETLKIQTKKSELTDEINDLRDLMEQMDERIES 679
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 586 STKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQV 443
S+K L EN+ LK ++DL+ V S +++ S D I V
Sbjct: 136 SSKTDKLSEENETLKLKVEDLQKQVSSFMSQMQDKNSEIQKMKDAISV 183
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 586 STKVISLENENKDLKKAIDDLRNLVISLQVRVETLESSSSITSDCIQV 443
S+K L EN+ LK ++DL+ V S +++ S D I V
Sbjct: 136 SSKTDKLSEENETLKLKVEDLQKQVSSFMSQMQDKNSEIQKMKDAISV 183
>AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical
protein C09E7.9 protein.
Length = 789
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = -1
Query: 592 ELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLES-SSSITSDCIQVQSE 434
+L +++ ++E+ NK+ KKAI DL N + L+ +E S S + + Q+++E
Sbjct: 419 QLKSELKNVEHLNKEHKKAI-DLANEISKLKTEIERETSISKQLEKEISQLRTE 471
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,493,235
Number of Sequences: 27780
Number of extensions: 317156
Number of successful extensions: 1029
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -