Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A15
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   6.5  

>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 361 YKSFRRNTNIV*REHTKTERTFFGNNNNIALANPYK 468
           YK++RR T+    ++ K+ R    N+++I L+NP K
Sbjct: 41  YKTYRRITDCPEIKNKKSRRKNQRNSSSIGLSNPNK 76


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 409 KTERTFFGNNNNIALANPY-KGC 474
           +T R FF NN  + L +PY +GC
Sbjct: 586 RTYRVFFLNNGTLPLNHPYVRGC 608


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 348 NTDTVQELQEKY*YSIKRTYKNRTNFFWEQQQHRASE 458
           +T TV++ +     SIK    N  NF  E+ ++ ASE
Sbjct: 8   STSTVKDNEHSLDLSIKSIPSNEKNFSTEKSENEASE 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,876
Number of Sequences: 5004
Number of extensions: 39045
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)