Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A13
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    86   4e-18
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.6  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   2.7  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   6.3  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   6.3  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   6.3  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   8.3  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    25   8.3  

>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 45/101 (44%), Positives = 61/101 (60%)
 Frame = -3

Query: 483 LVFEEACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKHGTYVINRQIPNKQ 304
           L +    ++TL+ L D FE L+E+    K  D+ Y++GV+T+ LG+ GTYVIN+Q P  Q
Sbjct: 45  LEYHRVADDTLDVLNDTFEDLLEEVGK-KDYDIQYANGVITLMLGEKGTYVINKQPPAHQ 103

Query: 303 IWLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEIS 181
           IWLSSP SGPK Y+  L+    W    D  TL  +L  E S
Sbjct: 104 IWLSSPVSGPKHYEYSLK-SKTWCSTRDEGTLLGILSSEFS 143


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +2

Query: 368 TPSLYVTSAP--FKFGASSINCSKKSHSDSKV--SLQASSNTRGSSSLRILSDN 517
           TP+ Y++S P   K   +S N +  S S S +  S  ASS+   SSSL   S N
Sbjct: 44  TPATYLSSVPTLLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTN 97


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 376  RWCINHIIRKARDIC 332
            RWC  H+ RK +++C
Sbjct: 982  RWCTKHLQRKTKEVC 996


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 339 TYVINRQIPNKQIWLSSPTSGPKRYDLVLEGGGYWIYKH 223
           TY  +R I  K  + ++  + P+ + + L   GY +Y H
Sbjct: 11  TYSFDRVITGKICFETNAATSPRSFQIQLRIKGYAVYHH 49


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 273 LVQTWGSSTKSVYLVSAGLSHMSR 344
           L+ T+G S K+VY V+  LS MS+
Sbjct: 337 LLGTYGYSNKNVYFVTVILSSMSK 360


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = +3

Query: 291 SSTKSVYLVSAGLSHMSRAFLMIW 362
           +S KS+ L++AGL+H+ +  + ++
Sbjct: 549 NSVKSIILINAGLAHLGKVSVQVF 572


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 410 ASSINCSKKSHSDSKVSLQASSNTRGS 490
           ASS      SH+DS  S Q+S  +RGS
Sbjct: 112 ASSSRHRSPSHNDSSPSTQSSLKSRGS 138


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +1

Query: 289 GAQPNLFI--WYLPVYHIC 339
           GA+P+ F   WYL V+H C
Sbjct: 308 GAEPSAFATRWYLTVFHQC 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,290
Number of Sequences: 5004
Number of extensions: 56375
Number of successful extensions: 189
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)