Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_A13
(725 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048097-1|AAH48097.1| 210|Homo sapiens frataxin protein. 121 2e-27
BC023633-1|AAH23633.1| 210|Homo sapiens frataxin protein. 121 2e-27
AL162730-2|CAH71829.1| 210|Homo sapiens frataxin protein. 121 2e-27
U43752-1|AAA98508.1| 210|Homo sapiens frataxin protein. 120 7e-27
U43747-1|AAA98510.1| 210|Homo sapiens frataxin protein. 120 7e-27
U43753-1|AAA98509.1| 171|Homo sapiens frataxin protein. 75 3e-13
U93173-1|AAD00734.1| 49|Homo sapiens frataxin protein. 49 1e-05
L42542-1|AAB00103.1| 655|Homo sapiens RLIP76 protein protein. 30 7.3
BC013126-1|AAH13126.1| 655|Homo sapiens ralA binding protein 1 ... 30 7.3
AY517554-1|AAT44527.1| 407|Homo sapiens hypothetical rhabdomyos... 30 7.3
AB209924-1|BAD93161.1| 462|Homo sapiens ralA binding protein 1 ... 30 7.3
>BC048097-1|AAH48097.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 121 bits (292), Expect = 2e-27
Identities = 58/109 (53%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = -3
Query: 477 FEEACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 301
+E ETL+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 300 WLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 154
WLSSP+SGPKRYD G W+Y HDGV+LH+LL E++ +K K+DL
Sbjct: 155 WLSSPSSGPKRYDWT---GKNWVYSHDGVSLHELLAAELTKALKTKLDL 200
>BC023633-1|AAH23633.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 121 bits (292), Expect = 2e-27
Identities = 58/109 (53%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = -3
Query: 477 FEEACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 301
+E ETL+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 300 WLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 154
WLSSP+SGPKRYD G W+Y HDGV+LH+LL E++ +K K+DL
Sbjct: 155 WLSSPSSGPKRYDWT---GKNWVYSHDGVSLHELLAAELTKALKTKLDL 200
>AL162730-2|CAH71829.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 121 bits (292), Expect = 2e-27
Identities = 58/109 (53%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = -3
Query: 477 FEEACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 301
+E ETL+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 300 WLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 154
WLSSP+SGPKRYD G W+Y HDGV+LH+LL E++ +K K+DL
Sbjct: 155 WLSSPSSGPKRYDWT---GKNWVYSHDGVSLHELLAAELTKALKTKLDL 200
>U43752-1|AAA98508.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 120 bits (288), Expect = 7e-27
Identities = 57/109 (52%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = -3
Query: 477 FEEACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 301
+E ETL+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 300 WLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 154
WLSSP+SGPKRYD G W++ HDGV+LH+LL E++ +K K+DL
Sbjct: 155 WLSSPSSGPKRYDWT---GKNWVFSHDGVSLHELLAAELTKALKTKLDL 200
>U43747-1|AAA98510.1| 210|Homo sapiens frataxin protein.
Length = 210
Score = 120 bits (288), Expect = 7e-27
Identities = 57/109 (52%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Frame = -3
Query: 477 FEEACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 301
+E ETL+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 300 WLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 154
WLSSP+SGPKRYD G W++ HDGV+LH+LL E++ +K K+DL
Sbjct: 155 WLSSPSSGPKRYDWT---GKNWVFSHDGVSLHELLAAELTKALKTKLDL 200
>U43753-1|AAA98509.1| 171|Homo sapiens frataxin protein.
Length = 171
Score = 74.9 bits (176), Expect = 3e-13
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = -3
Query: 477 FEEACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKH-GTYVINRQIPNKQI 301
+E ETL+SL +FFE L + + DV++ GVLT+ LG GTYVIN+Q PNKQI
Sbjct: 95 YERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQI 154
Query: 300 WLSSPT 283
WLSSP+
Sbjct: 155 WLSSPS 160
>U93173-1|AAD00734.1| 49|Homo sapiens frataxin protein.
Length = 49
Score = 49.2 bits (112), Expect = 1e-05
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = -3
Query: 279 GPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEISVIVKDKVDL 154
GPKRYD G W+Y HDGV+LH+LL E++ +K K+DL
Sbjct: 1 GPKRYDWT---GKNWVYSHDGVSLHELLAAELTKALKTKLDL 39
>L42542-1|AAB00103.1| 655|Homo sapiens RLIP76 protein protein.
Length = 655
Score = 30.3 bits (65), Expect = 7.3
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = -3
Query: 699 ECISK*YYGVEFNVMIRNIIRTGRWLVRLQINSLAPIAIRKSSSILKDFRLNVSCGFNNR 520
ECI Y ++ + I R ++ +++ L R+ S+ L+D+ N +
Sbjct: 215 ECID---YVEKYGMKCEGIYRVSG--IKSKVDELKAAYDREESTNLEDYEPNTVASLLKQ 269
Query: 519 RLSD---NIRNEEEPLVFEEACNETLES-LCDFFEQLIEDAP 406
L D N+ +E FEEAC T E+ F++L+++ P
Sbjct: 270 YLRDLPENLLTKELMPRFEEACGRTTETEKVQEFQRLLKELP 311
>BC013126-1|AAH13126.1| 655|Homo sapiens ralA binding protein 1
protein.
Length = 655
Score = 30.3 bits (65), Expect = 7.3
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = -3
Query: 699 ECISK*YYGVEFNVMIRNIIRTGRWLVRLQINSLAPIAIRKSSSILKDFRLNVSCGFNNR 520
ECI Y ++ + I R ++ +++ L R+ S+ L+D+ N +
Sbjct: 215 ECID---YVEKYGMKCEGIYRVSG--IKSKVDELKAAYDREESTNLEDYEPNTVASLLKQ 269
Query: 519 RLSD---NIRNEEEPLVFEEACNETLES-LCDFFEQLIEDAP 406
L D N+ +E FEEAC T E+ F++L+++ P
Sbjct: 270 YLRDLPENLLTKELMPRFEEACGRTTETEKVQEFQRLLKELP 311
>AY517554-1|AAT44527.1| 407|Homo sapiens hypothetical
rhabdomyosarcoma antigen MU-RMS-40.2A protein.
Length = 407
Score = 30.3 bits (65), Expect = 7.3
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = -3
Query: 699 ECISK*YYGVEFNVMIRNIIRTGRWLVRLQINSLAPIAIRKSSSILKDFRLNVSCGFNNR 520
ECI Y ++ + I R ++ +++ L R+ S+ L+D+ N +
Sbjct: 14 ECID---YVEKYGMKCEGIYRVSG--IKSKVDELKAAYDREESTNLEDYEPNTVASLLKQ 68
Query: 519 RLSD---NIRNEEEPLVFEEACNETLES-LCDFFEQLIEDAP 406
L D N+ +E FEEAC T E+ F++L+++ P
Sbjct: 69 YLRDLPENLLTKELMPRFEEACGRTTETEKVQEFQRLLKELP 110
>AB209924-1|BAD93161.1| 462|Homo sapiens ralA binding protein 1
variant protein.
Length = 462
Score = 30.3 bits (65), Expect = 7.3
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = -3
Query: 699 ECISK*YYGVEFNVMIRNIIRTGRWLVRLQINSLAPIAIRKSSSILKDFRLNVSCGFNNR 520
ECI Y ++ + I R ++ +++ L R+ S+ L+D+ N +
Sbjct: 22 ECID---YVEKYGMKCEGIYRVSG--IKSKVDELKAAYDREESTNLEDYEPNTVASLLKQ 76
Query: 519 RLSD---NIRNEEEPLVFEEACNETLES-LCDFFEQLIEDAP 406
L D N+ +E FEEAC T E+ F++L+++ P
Sbjct: 77 YLRDLPENLLTKELMPRFEEACGRTTETEKVQEFQRLLKELP 118
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,589,750
Number of Sequences: 237096
Number of extensions: 2011069
Number of successful extensions: 4206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4194
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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