Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A13
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53332-10|AAK31530.1|  136|Caenorhabditis elegans Frataxin (invo...   113   1e-25
AY048153-1|AAL05950.1|  136|Caenorhabditis elegans frataxin prot...   113   1e-25
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    32   0.36 
Z77666-5|CAB01230.1|  729|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U13072-2|AAK31397.2|  380|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    29   4.5  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    29   4.5  
U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U53332-10|AAK31530.1|  136|Caenorhabditis elegans Frataxin
           (involved in human friedrich'sataxia) homolog protein 1
           protein.
          Length = 136

 Score =  113 bits (272), Expect = 1e-25
 Identities = 60/127 (47%), Positives = 81/127 (63%), Gaps = 2/127 (1%)
 Frame = -3

Query: 531 FNNRRLSDNIRNEEEPLVFEEACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISL 352
           F  R  S  I ++ E   +E A + TLE L D+F+Q+ +  P  +  DV+++ GVLT+++
Sbjct: 10  FVRRSFSSRIFSQNE---YETAADSTLERLSDYFDQIADSFPVSEQFDVSHAMGVLTVNV 66

Query: 351 GKH-GTYVINRQIPNKQIWLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEI-SV 178
            K  GTYVIN+Q PNKQIWLSSP SGPKRYD  LE  G W Y HDG  L  LL +E   +
Sbjct: 67  SKSVGTYVINKQSPNKQIWLSSPMSGPKRYD--LEEEGKWTYAHDGEQLDSLLNREFRKI 124

Query: 177 IVKDKVD 157
           +  D++D
Sbjct: 125 LADDRID 131


>AY048153-1|AAL05950.1|  136|Caenorhabditis elegans frataxin
           protein.
          Length = 136

 Score =  113 bits (272), Expect = 1e-25
 Identities = 60/127 (47%), Positives = 81/127 (63%), Gaps = 2/127 (1%)
 Frame = -3

Query: 531 FNNRRLSDNIRNEEEPLVFEEACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISL 352
           F  R  S  I ++ E   +E A + TLE L D+F+Q+ +  P  +  DV+++ GVLT+++
Sbjct: 10  FVRRSFSSRIFSQNE---YETAADSTLERLSDYFDQIADSFPVSEQFDVSHAMGVLTVNV 66

Query: 351 GKH-GTYVINRQIPNKQIWLSSPTSGPKRYDLVLEGGGYWIYKHDGVTLHKLLQQEI-SV 178
            K  GTYVIN+Q PNKQIWLSSP SGPKRYD  LE  G W Y HDG  L  LL +E   +
Sbjct: 67  SKSVGTYVINKQSPNKQIWLSSPMSGPKRYD--LEEEGKWTYAHDGEQLDSLLNREFRKI 124

Query: 177 IVKDKVD 157
           +  D++D
Sbjct: 125 LADDRID 131


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 471 EACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKHGTY 334
           ++C E +E        L E+    K +D+TY D +LT  LGKH  +
Sbjct: 512 QSCIELIEKPLGIVSMLDEECIVPKASDMTYVDKLLTQHLGKHPNF 557


>Z77666-5|CAB01230.1|  729|Caenorhabditis elegans Hypothetical
           protein K08E7.7 protein.
          Length = 729

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -3

Query: 672 VEFNVMIRNIIRTGRWLVRLQINSLAPIAIRKSSSILKDFRLNVSCGFNNRRLS---DNI 502
           ++FNV+++    TG W    QI  + P   R+ S+ILK+F    +   N RRL+      
Sbjct: 486 IDFNVILQT---TGAWPSLDQIKIILP---RELSTILKEFDTFYNASHNGRRLNWAYSQC 539

Query: 501 RNEEEPLVFEE 469
           R E     FE+
Sbjct: 540 RGEVNSKAFEK 550


>U13072-2|AAK31397.2|  380|Caenorhabditis elegans Hypothetical
           protein C07D10.5 protein.
          Length = 380

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/79 (30%), Positives = 41/79 (51%)
 Frame = -3

Query: 552 RLNVSCGFNNRRLSDNIRNEEEPLVFEEACNETLESLCDFFEQLIEDAPNLKGADVTYSD 373
           RL+   GF    LS+  +N E+  +  E C++ LESL +  E+  ED    +GA+    +
Sbjct: 8   RLDEIIGFE---LSNGTKNREK--ITTELCSQFLESLSEEIEKNGEDVEEDEGANEQPFE 62

Query: 372 GVLTISLGKHGTYVINRQI 316
             L + +GK   Y+ N ++
Sbjct: 63  DKLNL-IGKIQQYLTNAKM 80


>Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical
           protein T08G3.5 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -1

Query: 542 LVVVLITEDYLIISAMKRNL 483
           L+VVLI E YLI SA+ +NL
Sbjct: 251 LIVVLIPESYLIYSAVTKNL 270


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical
           protein K12F2.1 protein.
          Length = 1969

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 471 EACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKHGTY 334
           +AC E +E        L E+    K  D+TY+  +L   LGKH  +
Sbjct: 522 QACIELIEKPLGIISILDEECIVPKATDMTYAQKLLDQHLGKHPNF 567


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain
           3 protein.
          Length = 1969

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 471 EACNETLESLCDFFEQLIEDAPNLKGADVTYSDGVLTISLGKHGTY 334
           +AC E +E        L E+    K  D+TY+  +L   LGKH  +
Sbjct: 522 QACIELIEKPLGIISILDEECIVPKATDMTYAQKLLDQHLGKHPNF 567


>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +3

Query: 384 LRQLLSNSVHLR-LTAQKNHTATLR-SRCKPLQI-LEV-PLHCGYYQIIFGY 527
           ++ LL  SV +  ++A   H   +R S CKP+   ++V  L CGYYQI  GY
Sbjct: 3   VKSLLLLSVAIAYVSADCLHCICMRESGCKPIGCHMDVGSLSCGYYQIKIGY 54


>AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical
           protein B0524.1 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 510 DNIRNEEEPLVFEEACNETLESLCDFFEQLIED 412
           D++  +EEP  F E      E +CD FE  IE+
Sbjct: 480 DDVITKEEPTDFSEENLVKKEEICDDFEHKIEE 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,558,162
Number of Sequences: 27780
Number of extensions: 315942
Number of successful extensions: 888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)