Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_A08
(340 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 0.64
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 0.64
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ... 29 0.64
Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical pr... 27 2.6
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 27 2.6
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 2.6
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 27 2.6
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 27 2.6
U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical pr... 27 4.5
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 4.5
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 4.5
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 4.5
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 4.5
Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical pr... 26 6.0
AL031627-22|CAI79188.1| 213|Caenorhabditis elegans Hypothetical... 26 6.0
Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p... 26 7.9
Z82268-10|CAB05202.1| 972|Caenorhabditis elegans Hypothetical p... 26 7.9
Z66513-1|CAA91329.3| 426|Caenorhabditis elegans Hypothetical pr... 26 7.9
U40952-1|AAK68681.3| 436|Caenorhabditis elegans Hypothetical pr... 26 7.9
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ... 26 7.9
AL021476-1|CAA16317.1| 972|Caenorhabditis elegans Hypothetical ... 26 7.9
>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 29.5 bits (63), Expect = 0.64
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -3
Query: 149 RLALRNPDVSWNKKTNPEPW--EAYRNKQYKFYSP-IRDYSKEEXPAPKDET 3
R+ ++NP VS N N P +A + YK+ ++ +K P PKDET
Sbjct: 513 RILIKNPSVSINMFVNGGPGKSDAEQTMFYKWSMRYVKRVAKHRDPEPKDET 564
>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
protein F56H9.5 protein.
Length = 1139
Score = 29.5 bits (63), Expect = 0.64
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -3
Query: 149 RLALRNPDVSWNKKTNPEPW--EAYRNKQYKFYSP-IRDYSKEEXPAPKDET 3
R+ ++NP VS N N P +A + YK+ ++ +K P PKDET
Sbjct: 513 RILIKNPSVSINMFVNGGPGKSDAEQTMFYKWSMRYVKRVAKHRDPEPKDET 564
>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
protein.
Length = 1139
Score = 29.5 bits (63), Expect = 0.64
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = -3
Query: 149 RLALRNPDVSWNKKTNPEPW--EAYRNKQYKFYSP-IRDYSKEEXPAPKDET 3
R+ ++NP VS N N P +A + YK+ ++ +K P PKDET
Sbjct: 513 RILIKNPSVSINMFVNGGPGKSDAEQTMFYKWSMRYVKRVAKHRDPEPKDET 564
>Z92829-5|CAB07345.1| 324|Caenorhabditis elegans Hypothetical
protein F10A3.5 protein.
Length = 324
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 176 CGGAVFYTLRLALRNPDVSWNKKTNPEPWEAY--RNKQYKFYSP 51
C A+++ L L +P +++ PE WE+Y + +Y + P
Sbjct: 141 CNSAIWFFCFLVLNSPSPMKDEELFPEFWESYCLKPNEYTYTGP 184
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 65 CTACSCKPPMVQGWSSCSKIHQDYAKP----DAEYRTQLHHILSPHIHTEGSKPYASSNL 232
C +CKP +++ + C K+ ++ K D + + H IL+ P+A +
Sbjct: 39 CAENTCKPDILRVPAHCGKLDKEEEKSKTPLDQQQQINFHDILNSKFVVGPPSPFALVAI 98
Query: 233 RGSVLA 250
S+LA
Sbjct: 99 AKSILA 104
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -3
Query: 155 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEEXPAPK 12
+LR +L N T A RNKQ+ YS D S+ APK
Sbjct: 728 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 775
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -3
Query: 155 TLRLALRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEEXPAPK 12
+LR +L N T A RNKQ+ YS D S+ APK
Sbjct: 786 SLRCSLNNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPK 833
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 65 CTACSCKPPMVQGWSSCSKIHQDYAKP----DAEYRTQLHHILSPHIHTEGSKPYASSNL 232
C +CKP +++ + C K+ ++ K D + + H IL+ P+A +
Sbjct: 39 CAENTCKPDILRVPAHCGKLDKEEEKSKTPLDQQQQINFHDILNSKFVVGPPSPFALVAI 98
Query: 233 RGSVLA 250
S+LA
Sbjct: 99 AKSILA 104
>U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical
protein T19D12.7 protein.
Length = 400
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 107 SSCSKIHQDYAKPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSVLA 250
S C + Y D Y T LHH+L IH + P +S + RG ++
Sbjct: 69 SMCHLLRSSYPDYDISYLTSLHHLL---IHF--NIPSSSYSARGKTMS 111
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 86 AYRNKQYKFYSPIRDYSKEEXPAPK 12
A RNKQ+ YS D S+ APK
Sbjct: 785 AVRNKQFNMYSENGDLSRPSDSAPK 809
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 86 AYRNKQYKFYSPIRDYSKEEXPAPK 12
A RNKQ+ YS D S+ APK
Sbjct: 843 AVRNKQFNMYSENGDLSRPSDSAPK 867
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 86 AYRNKQYKFYSPIRDYSKEEXPAPK 12
A RNKQ+ YS D S+ APK
Sbjct: 896 AVRNKQFNMYSENGDLSRPSDSAPK 920
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 86 AYRNKQYKFYSPIRDYSKEEXPAPK 12
A RNKQ+ YS D S+ APK
Sbjct: 815 AVRNKQFNMYSENGDLSRPSDSAPK 839
>Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical
protein ZK593.2 protein.
Length = 152
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 160 SILCVWLCVILMYLGTR-RPTLNHGRLTGTSST 65
S+LCV+LC+++ TR RP+ H T T
Sbjct: 5 SLLCVFLCILISAPFTRSRPSEEHPMYTAARLT 37
>AL031627-22|CAI79188.1| 213|Caenorhabditis elegans Hypothetical
protein Y102A5C.36 protein.
Length = 213
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 175 HPIPTHTYRGIKALCFFKLERLSPCILNYLI 267
H IP G+K LCFF +S IL +L+
Sbjct: 5 HLIPRALLLGLKNLCFFVFPFVSFIILMFLV 35
>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
protein Y37A1C.1c protein.
Length = 1210
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 202 LCMYVWG*DVVELCSILCVWLC--VILMYLGTRRPTLNHGRLTGTSSTSSIL 53
LC++V +++ S L + C I MYL R+P +N G T S + L
Sbjct: 672 LCVFVMF--IIDWFSALVTFFCFGAIFMYLLHRKPDVNWGSSTQAHSYKNAL 721
>Z82268-10|CAB05202.1| 972|Caenorhabditis elegans Hypothetical
protein Y37A1C.1a protein.
Length = 972
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 202 LCMYVWG*DVVELCSILCVWLC--VILMYLGTRRPTLNHGRLTGTSSTSSIL 53
LC++V +++ S L + C I MYL R+P +N G T S + L
Sbjct: 672 LCVFVMF--IIDWFSALVTFFCFGAIFMYLLHRKPDVNWGSSTQAHSYKNAL 721
>Z66513-1|CAA91329.3| 426|Caenorhabditis elegans Hypothetical
protein F54D5.2 protein.
Length = 426
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 158 YTLRLALRNPDVSWNK 111
YTL +N D+SWNK
Sbjct: 27 YTLPFVTKNNDISWNK 42
>U40952-1|AAK68681.3| 436|Caenorhabditis elegans Hypothetical
protein C03B1.13 protein.
Length = 436
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 188 VGIGCGGAVFYTLRLALRNPDVSW 117
+GIGCGG ++ L L +P+ +W
Sbjct: 320 IGIGCGGPAWF-LTSELVDPEYAW 342
>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
protein Y37A1C.1c protein.
Length = 1210
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 202 LCMYVWG*DVVELCSILCVWLC--VILMYLGTRRPTLNHGRLTGTSSTSSIL 53
LC++V +++ S L + C I MYL R+P +N G T S + L
Sbjct: 672 LCVFVMF--IIDWFSALVTFFCFGAIFMYLLHRKPDVNWGSSTQAHSYKNAL 721
>AL021476-1|CAA16317.1| 972|Caenorhabditis elegans Hypothetical
protein Y37A1C.1a protein.
Length = 972
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -1
Query: 202 LCMYVWG*DVVELCSILCVWLC--VILMYLGTRRPTLNHGRLTGTSSTSSIL 53
LC++V +++ S L + C I MYL R+P +N G T S + L
Sbjct: 672 LCVFVMF--IIDWFSALVTFFCFGAIFMYLLHRKPDVNWGSSTQAHSYKNAL 721
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,050,960
Number of Sequences: 27780
Number of extensions: 168278
Number of successful extensions: 523
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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