Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A07
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334...    36   0.049
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    36   0.049
06_01_0935 + 7216044-7216297,7216311-7216388,7216424-7216634           29   4.2  
06_03_0592 + 22585546-22588573,22588680-22589032                       29   5.6  

>12_01_0425 +
           3347804-3348284,3348544-3348759,3349038-3349588,
           3349752-3349815,3349915-3349975,3350271-3350409,
           3350561-3350677,3350794-3350971,3351218-3351828
          Length = 805

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = -2

Query: 708 DVNNKKLVNYNII*KKDPLG--LNKKLIVLFLNFKC-NKRTTSTY 583
           + NN++++ Y    KK P+G  LNK  +V  LN KC NK+T   Y
Sbjct: 707 EFNNREVIVYKDDSKKPPVGEGLNKAAVVTLLNIKCMNKKTGDQY 751


>12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,
            3338974-3339022,3339225-3339533,3339555-3339710,
            3339871-3340086,3340404-3340906,3341050-3341116,
            3341215-3341272,3341561-3341699,3341840-3341956,
            3342069-3342246,3342459-3343093
          Length = 996

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = -2

Query: 708  DVNNKKLVNYNII*KKDPLG--LNKKLIVLFLNFKC-NKRTTSTY 583
            + NN++++ Y    KK P+G  LNK  +V  LN KC NK+T   Y
Sbjct: 898  EFNNREVIVYKDDSKKPPVGEGLNKAAVVTLLNIKCMNKKTGEQY 942


>06_01_0935 + 7216044-7216297,7216311-7216388,7216424-7216634
          Length = 180

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -1

Query: 628 SVFKFQVQQTDDIHIFTYVCKYKSVAKSAC 539
           +V+K +V++ D +H F+ + +YK+V  + C
Sbjct: 121 NVYKKKVKEADVVHSFSEIAEYKNVTLNDC 150


>06_03_0592 + 22585546-22588573,22588680-22589032
          Length = 1126

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 213  SLHRYIDARALSATDEQCHDPRMLSHRSTFLLVLMNCL 326
            SLH ++ ARA      +  DPRML        V+ NC+
Sbjct: 1049 SLHEHV-ARAFPKNTYEIVDPRMLQGEMNITTVMQNCI 1085


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,659,142
Number of Sequences: 37544
Number of extensions: 304003
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)