Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A06
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   2.5  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   2.5  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.4  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = -3

Query: 480 FMKSYGTHYIESFVTGNFIYQVFKYKRSGYNRLRSYIRIRNSRPTLPDNLRFYFSSYYLK 301
           F KS      E      +I  + KY    YN ++  IR R    T+P   + Y +S    
Sbjct: 37  FQKSTSQLSFEELYRNAYILVLHKYGEKLYNHVQDVIRSRLKEETVPAIYKNYDASLLGN 96

Query: 300 HVGDIKVASGNKTVEFWAR 244
            + DI+      T   W+R
Sbjct: 97  ALLDIRKNDSYST--SWSR 113


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 384 LRSYIRIRNSRPTLPDNLRFYFSSYYLKHVGDIKVASGNKTV 259
           LR  ++IRN  P L D+ + YF        G +K   G ++V
Sbjct: 123 LRMIVKIRNKDPDLYDSQQKYFDEVEKDVQGSLKSKDGFRSV 164


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -3

Query: 384 LRSYIRIR---NSRPTLPDNLRFYFSSYYLKH 298
           + +Y+ +R   NS  T   ++ FY+ SYYLK+
Sbjct: 126 MNAYVGVRTFSNSLETTLTSIGFYYFSYYLKY 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,772
Number of Sequences: 5004
Number of extensions: 47546
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)