Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_A02
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   2.7  
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   4.7  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   6.2  
SPAC343.08c |mrp17||mitochondrial ribosomal protein subunit Mrp1...    26   6.2  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   8.2  

>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 488 NPVSVKETTSHDCTVKGTNGRLRKHSLMSMKRCW 589
           +P S KE   H       N R+R+ SL  + RCW
Sbjct: 433 DPESRKELDKHSDWHFRINKRIRESSLHGINRCW 466


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 588 QHLFIDMRECFRRRPLVPLTVQSWLVVSFTLTGLKRDADT 469
           + L  D+   F+    +PL   ++LV +FTL G+    DT
Sbjct: 41  EELAFDLEPYFQVVSSIPLEKHTFLVTNFTLRGIDFFVDT 80


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 367 WNLWLELSLKIILKKRQKFIE 429
           WN+WL    KI  K++ KF E
Sbjct: 370 WNMWLSQVQKINEKEKDKFYE 390


>SPAC343.08c |mrp17||mitochondrial ribosomal protein subunit
           Mrp17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 134 KKRTMSXSYGHWW 96
           KK   S S+GHWW
Sbjct: 57  KKLNQSYSFGHWW 69


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 568 ERVFSEAAISTFNCAIVACCL 506
           ++ +  +A+  ++CAIV CC+
Sbjct: 417 QKPYDPSAVDVWSCAIVYCCI 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,182
Number of Sequences: 5004
Number of extensions: 48524
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)