Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P22
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)               74   1e-13
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)                35   0.066
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_56255| Best HMM Match : Arf (HMM E-Value=0)                         30   1.4  
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_55994| Best HMM Match : RnaseA (HMM E-Value=4.6)                    28   5.7  
SB_45651| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_27557| Best HMM Match : Ras (HMM E-Value=0)                         27   9.9  
SB_12511| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_253| Best HMM Match : GRP (HMM E-Value=0.61)                        27   9.9  

>SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 30/36 (83%), Positives = 33/36 (91%)
 Frame = +2

Query: 467 QIWDFPGQIDFFDPTFDSDTIFGGCGALVFVIDAQD 574
           +IWDFPGQIDFFDP FDS+ IFG CGALVFVIDAQ+
Sbjct: 96  EIWDFPGQIDFFDPAFDSEVIFGNCGALVFVIDAQN 131


>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2229

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
 Frame = +2

Query: 317 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLES-TNQI------VKDDINNSSFVQFQIW 475
           +++L+G    GK+++     H++  + T F+ S TN I      +K D  +  F+ F+IW
Sbjct: 553 KLMLVGREAQGKTTLM----HRLMLDNTYFINSATNGISMEEFRLKKDFLHREFI-FKIW 607

Query: 476 DFPGQIDFF 502
           DF GQ D++
Sbjct: 608 DFGGQEDYY 616


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 299 QDDHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWD 478
           + D + RILL+GL  SGK++I K     ++  + L +  T       + +    +  +WD
Sbjct: 13  EKDREMRILLLGLDNSGKTTILK----SLASEDVLHITPTQGFNIKSVQSKGGFRLNVWD 68

Query: 479 FPGQ 490
             GQ
Sbjct: 69  IGGQ 72


>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
          Length = 181

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 24/86 (27%), Positives = 41/86 (47%)
 Frame = +2

Query: 317 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFPGQID 496
           RIL++GL  +GK++I     +K+   E +    T     + +   + + F +WD  GQ D
Sbjct: 19  RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVETVEYKN-ISFTVWDVGGQ-D 72

Query: 497 FFDPTFDSDTIFGGCGALVFVIDAQD 574
              P +     F     L+FV+D+ D
Sbjct: 73  KIRPLWRH--YFQNTQGLIFVVDSND 96


>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/86 (26%), Positives = 41/86 (47%)
 Frame = +2

Query: 317 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFPGQID 496
           RIL++GL  +GK++I     +K+   E +    T     + +   + + F +WD  GQ D
Sbjct: 19  RILMVGLDAAGKTTI----LYKLKLGEIVTTIPTIGFNVESVEYKN-ISFTVWDVGGQ-D 72

Query: 497 FFDPTFDSDTIFGGCGALVFVIDAQD 574
              P +     F     L++V+D+ D
Sbjct: 73  KIRPLWRH--YFQNTQGLIYVVDSND 96


>SB_55994| Best HMM Match : RnaseA (HMM E-Value=4.6)
          Length = 178

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 547 SSTSTKYGVRIKCRIKEVYLPGKVPYLKLYKTAVINVVFNN 425
           SS   KY  RIK RI E  L G+   + L  T+ + V F N
Sbjct: 11  SSLVAKYWCRIKSRIHENTLVGETAKISLSSTSNVPVSFIN 51


>SB_45651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 428 VKDDINNSSFVQFQIWDFPGQIDFF 502
           +K D  +  F+ F+IWDF GQ D++
Sbjct: 9   LKKDFLHREFI-FKIWDFGGQEDYY 32


>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
          Length = 184

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = +2

Query: 317 RILLMGLRRSGKSSIQKVV-----FHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDF 481
           RI+L+G    GKSS+ +       F    P   +        +K D+     ++ QIWD 
Sbjct: 15  RIILIGDSTVGKSSLLRQFTEGQFFENSDPTVGVDFHVRVLELKGDVR----IKLQIWDT 70

Query: 482 PGQIDFFDPTFDSDTIFGGCGALVFVIDAQDDYQDALD 595
            GQ  F   T+       GC  +++ I  +D + + +D
Sbjct: 71  AGQERFRSITYSYYRNTVGC-LIIYDITNRDSFVNVMD 107


>SB_12511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 200 SYQDDPNCYVGSFPKDFTY 256
           SY DDP+  VGSF +D T+
Sbjct: 272 SYLDDPSYTVGSFVEDLTF 290


>SB_253| Best HMM Match : GRP (HMM E-Value=0.61)
          Length = 356

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 449 SSFVQFQIWDFPGQIDFFDPTFDSDTIFGGCG 544
           S F + Q W+F  Q+D+    FD DT + G G
Sbjct: 68  SHFFRNQQWNFTHQLDYGIRYFDIDTCYVGKG 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,556,073
Number of Sequences: 59808
Number of extensions: 353352
Number of successful extensions: 777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)