Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P22
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 213 IQIVMWGRSPRILPMDLSSKM 275
           I+ ++W R  R+LP++   K+
Sbjct: 519 IESIVWERDTRVLPINRKQKV 539


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 587 HLDNHPVHQLQRQELHIH 534
           HLDNH VH      +  H
Sbjct: 275 HLDNHHVHHANHHAILGH 292


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 77  KYPQMYVHQFLTDTLRSNL 21
           KY + + HQ +    RSNL
Sbjct: 242 KYTRSFAHQSINKEARSNL 260


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 77  KYPQMYVHQFLTDTLRSNL 21
           KY + + HQ +    RSNL
Sbjct: 237 KYTRSFAHQSINKEARSNL 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,099
Number of Sequences: 438
Number of extensions: 4299
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)