Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P21
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    33   0.031
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    30   0.38 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.88 
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    27   2.7  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   4.7  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   4.7  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   6.2  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             25   8.2  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   8.2  

>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 33.5 bits (73), Expect = 0.031
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +1

Query: 463 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEK 642
           EEKR+++EE++K  + +LQA  +  K   N  + KKS        +   +  KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195

Query: 643 KISL 654
           K  L
Sbjct: 196 KAML 199


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +1

Query: 457 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 624
           ++EEK   LE A+   Q ++ ++KD     +K       +  ++  G+S+A L + K K 
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220

Query: 625 QLEXEKKISLSIRIKPLT 678
             + +KK S    I+  T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 457 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 633
           + EEK +R  E + KR+A  +A ++A +       ++K++     NA+ E   K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678

Query: 634 XEKKISLSIRIKPLTIE 684
              K     ++K  T E
Sbjct: 679 ENAKREAEEKVKRETEE 695



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 457 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 633
           + EEK +R  E + KR+A  +A ++A +       ++K++     NA+ E   K K + E
Sbjct: 636 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEENAKREAEEKVKRETE 694

Query: 634 XEKK 645
              K
Sbjct: 695 ENAK 698


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 547 PNFTIQKKSENFGLSNAQLERNKTKEQLE-XEKKISLSIRIKPLTIEGL 690
           P FTI++K +NF ++N   ERN   ++L   +  ++  + ++   I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 309 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 193
           P+FA  +   L LF+Q+ P + +    FW S+ L+  +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 124 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNVESA 20
           CW  I    G S  L+  AL+L PA+    NV S+
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLSS 326


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +1

Query: 469 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXE 639
           K   +   +++R A +QA+ D S   +T  +   + +SEN GL N  ++     +QLE E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 19  PRTPHSNVAVLPVQEPV 69
           PR PHS + +LP + PV
Sbjct: 357 PRYPHSQMVMLPARSPV 373


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 703 SCRRRDPRWSAA*CGW 656
           SCRR+D RW AA   W
Sbjct: 139 SCRRKDNRWFAAINKW 154


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 575 SLFFWMVKLGPVLLASFMAWSIAW 504
           SL+FW   L P    +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,666
Number of Sequences: 5004
Number of extensions: 25724
Number of successful extensions: 105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)