Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P21
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   36   0.033
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.10 
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     32   0.40 
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)                    31   0.71 
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           31   1.2  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      30   1.6  
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)                    29   2.8  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   29   3.8  
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              29   3.8  
SB_13201| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     29   5.0  
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_53860| Best HMM Match : fn3 (HMM E-Value=3.6e-07)                   28   8.7  
SB_46344| Best HMM Match : ig (HMM E-Value=0.0082)                     28   8.7  
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   8.7  

>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 22/61 (36%), Positives = 35/61 (57%)
 Frame = +1

Query: 463 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEK 642
           +  ++ L + EKK Q ML+  K A+K  P F ++  +EN G   A+   N  +++LE EK
Sbjct: 607 QRNKEALAKKEKKIQEMLEEEKKATKFEP-FNLE--TENRGSVKAEKWLNSVQQELEEEK 663

Query: 643 K 645
           K
Sbjct: 664 K 664


>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +1

Query: 460 IEEKRQRLEEAEKKRQAMLQAMKDA 534
           +EE+R+RLE  EK+RQA  QAM++A
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQEA 343


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/61 (26%), Positives = 35/61 (57%)
 Frame = +1

Query: 457 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEX 636
           ++EEK++RL+  E+ + ++ +A K+ASK+  + T + +S N  ++         K  ++ 
Sbjct: 427 EVEEKKRRLQRYERLQSSLNEAYKEASKSSVDGT-RDESRNEEITQTSCNETSGKTPIKE 485

Query: 637 E 639
           E
Sbjct: 486 E 486


>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
          Length = 703

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +1

Query: 460 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 627
           +EE+R+R EEAEKKR+   +  ++  +    +   KK E   L   QLER K +++
Sbjct: 252 MEEERKRKEEAEKKREEEERKRREEEEAAQKW---KKEEL--LRQQQLEREKEEQE 302


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 463  EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSEN 579
            EE+RQ+ EEA K+R+  L A K++SK+      +++S N
Sbjct: 1344 EERRQKREEARKRREEKL-AKKESSKSSNKRKSKERSGN 1381


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 513  APGHE--RCQQDRTQLHHPKEERKLRFEQ 593
            APGH+  RC QD  +L+  K ERK R EQ
Sbjct: 1105 APGHQPLRCLQDVEELYLSKVERKDRLEQ 1133


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +1

Query: 490  AEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEKKISLSIR-- 663
            A KK  + ++  +D ++TG     QK+S+   +  A  E+ K   QL   +K  LS +  
Sbjct: 1428 AGKKCDSQVRYDEDLNETGRKKHKQKRSKIIDIDFANSEKEKVVTQLSESRKRKLSKQDH 1487

Query: 664  IKPLTIEGLSVDNSDXR 714
            I    I+    D++D R
Sbjct: 1488 IGTCRIKSKKTDDTDSR 1504


>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
          Length = 591

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +1

Query: 499 KRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEKKISLSIR 663
           +++A  +++K+  +     TIQ+  E+F     +LE  K KEQ   E+  S +++
Sbjct: 214 QQKAQQESLKETLQEQEKETIQQLEEDFKAQLNELEVEKAKEQTALEEMKSFTVK 268


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +1

Query: 463 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEK 642
           EE+R++ EEAE++R+   +  K   +      +QK+ +         +R + ++Q   E 
Sbjct: 636 EERRRQQEEAERQRREQEEVFKQQEQQRQQLELQKRQQEQQRQQELQKRQQEEKQRMAEM 695

Query: 643 K 645
           +
Sbjct: 696 R 696


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +1

Query: 463  EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEK 642
            ++KR+R E+  K+RQ  L+  K+  +      I+K+         Q ER + KE+ E +K
Sbjct: 914  KDKREREEKERKRRQQQLE--KEKKEKEKKLLIEKEKRE---KEKQKERLREKEEKEKQK 968

Query: 643  K 645
            +
Sbjct: 969  E 969


>SB_13201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/73 (27%), Positives = 39/73 (53%)
 Frame = +1

Query: 457 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEX 636
           DI  K++  EE +KKR+     +   ++     + +KKS +    +AQ+E +  + QLE 
Sbjct: 252 DIGIKQKNPEECQKKRRKRRNLVSPEAEVNAKRSQEKKSVSL---SAQIEPD-LRNQLER 307

Query: 637 EKKISLSIRIKPL 675
           E++  L+ + + L
Sbjct: 308 ERRNDLNTKFQKL 320


>SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +1

Query: 463 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEK 642
           +EK + + E  KKR  M +  ++  K      +QK+ E   L N  LE  +  +  E E+
Sbjct: 119 KEKAEEVNERAKKRALMYKYHEEKLKEDKRLNLQKQQEE--LRNKILEDVQALQ--EDER 174

Query: 643 KISLSIRIKPLTIE 684
             +L +R K   +E
Sbjct: 175 NKTLQVRNKQREVE 188


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 457 DIEEKRQRLEEAEKKRQAMLQAMKD 531
           D+EEK + LEEA+ + +A+   MKD
Sbjct: 522 DLEEKAKELEEAKSENEAISGKMKD 546


>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 463 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLE 633
           EEKR   EEA K+++++ + +  + K     T +K+ E        ++ N+  ++ E
Sbjct: 459 EEKRTESEEAPKRKKSLKRRLSFSRKNKAKKTEEKQDEEGEAREGTMDDNEVSQKPE 515


>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +1

Query: 463 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXEK 642
           EE+ ++ EEAE+K+Q  L+ +    +       Q+K E       + ER + +++ E EK
Sbjct: 277 EEEEKQKEEAERKKQEKLEKLAKKKEELKERKRQEKLEQ-KAKKKEKERQEREKEKEREK 335

Query: 643 K 645
           +
Sbjct: 336 E 336


>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +1

Query: 193 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRA 312
           PA ++EGEG+P+  +R+ Q  +  ++Q K    + +K ++
Sbjct: 56  PANEEEGEGEPKPKRRKAQPSAPKEKQTKSRKRDKKKDKS 95


>SB_53860| Best HMM Match : fn3 (HMM E-Value=3.6e-07)
          Length = 288

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 86 VTQSLGTGSWTGSTATLECGVRGEP 12
          V+ +  T SW G   +L+C  RG P
Sbjct: 2  VSSTTNTSSWDGKVLSLQCKARGVP 26


>SB_46344| Best HMM Match : ig (HMM E-Value=0.0082)
          Length = 181

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 74 LGTGSWTGSTATLECGVRGEP 12
          + T SW G   +L+C VRG P
Sbjct: 1  MNTSSWDGKVLSLQCKVRGLP 21


>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 337

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 394 RGAFLLRHEKPCAWPASL*GV 332
           RGA L R+E PC W A L G+
Sbjct: 69  RGAALQRNEPPCMWIAILNGI 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,765
Number of Sequences: 59808
Number of extensions: 221278
Number of successful extensions: 766
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)