Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P20
         (321 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   1.0  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   1.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   1.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   3.2  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    20   7.3  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          19   9.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    19   9.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    19   9.7  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    19   9.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    19   9.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    19   9.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    19   9.7  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           19   9.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           19   9.7  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    19   9.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    19   9.7  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 66  ISCFQ*CIWNCLLIIAMSNFVRYLIIANFIGN 161
           ++ F      CL++I   + V+ L   NFI N
Sbjct: 232 VALFNDVFGTCLILITGKSIVQLLTCLNFITN 263



 Score = 19.8 bits (39), Expect = 7.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 64  CFNFLTNQLNN 32
           C NF+TN L +
Sbjct: 257 CLNFITNNLKS 267


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 66  ISCFQ*CIWNCLLIIAMSNFVRYLIIANFIGN 161
           ++ F      CL++I   + V+ L   NFI N
Sbjct: 232 VALFNDVFGTCLILITGKSIVQLLTCLNFITN 263



 Score = 19.8 bits (39), Expect = 7.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 64  CFNFLTNQLNN 32
           C NF+TN L +
Sbjct: 257 CLNFITNNLKS 267


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 80  IVHLELFAHYSNVEFCKI 133
           + HLE+  +Y+ + FC+I
Sbjct: 321 VYHLEIEKYYNILYFCRI 338



 Score = 19.4 bits (38), Expect = 9.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 123 FVRYLIIANFIGNYVIPIII 182
           F   ++    IGN ++PI+I
Sbjct: 74  FCIIIMCLGVIGNVMVPIVI 93


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -2

Query: 125 KIRHCYNEQTI 93
           +IRH +NE+T+
Sbjct: 415 QIRHAFNEETV 425


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 141 IANFIGNYVIPIIIKYKC 194
           + NF+  YV  I + Y C
Sbjct: 164 VPNFVNEYVQAIEVLYIC 181


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 48  PTNSTIQENQPAIGRP 1
           PT + IQE QP   +P
Sbjct: 70  PTVTEIQETQPQRTKP 85


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 123 FVRYLIIANFIGNYVIPIII 182
           F   ++    IGN ++PI+I
Sbjct: 74  FCIIIMCLGVIGNVMVPIVI 93


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 149 ISNYQISYKIRHCYNEQ 99
           +S+YQ    +  CY +Q
Sbjct: 1   MSSYQFVNSLAQCYGQQ 17


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 149 ISNYQISYKIRHCYNEQ 99
           +S+YQ    +  CY +Q
Sbjct: 1   MSSYQFVNSLAQCYGQQ 17


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 149 ISNYQISYKIRHCYNEQ 99
           +S+YQ    +  CY +Q
Sbjct: 1   MSSYQFVNSLAQCYGQQ 17


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 149 ISNYQISYKIRHCYNEQ 99
           +S+YQ    +  CY +Q
Sbjct: 1   MSSYQFVNSLAQCYGQQ 17


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 149 ISNYQISYKIRHCYNEQ 99
           +S+YQ    +  CY +Q
Sbjct: 1   MSSYQFVNSLAQCYGQQ 17


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 48  PTNSTIQENQPAIGRP 1
           PT + IQE QP   +P
Sbjct: 61  PTVTEIQETQPQRTKP 76


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 149 ISNYQISYKIRHCYNEQ 99
           +S+YQ    +  CY +Q
Sbjct: 1   MSSYQFVNSLAQCYGQQ 17


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 149 ISNYQISYKIRHCYNEQ 99
           +S+YQ    +  CY +Q
Sbjct: 1   MSSYQFVNSLAQCYGQQ 17


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 19.4 bits (38), Expect = 9.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 149 ISNYQISYKIRHCYNEQ 99
           +S+YQ    +  CY +Q
Sbjct: 1   MSSYQFVNSLAQCYGQQ 17


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,731
Number of Sequences: 336
Number of extensions: 861
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6048897
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)