Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P20
         (321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    29   0.13 
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   2.1  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    24   5.0  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    23   8.7  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    23   8.7  

>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 50  QEIKTHFMFSIVHLELFAHYSNVEFCKIFD 139
           Q ++  F ++  HL+LF H + + F K+F+
Sbjct: 291 QRLEEAFYYAEEHLKLFTHVTEISFVKLFE 320


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 229 YLFIYLETFTHQHLYLIIIGIT*LPIKLAIIKYL 128
           YLF Y E F    +  II+ +T    K  I+K L
Sbjct: 39  YLFTYKEAFVFNTVVFIIVFLTGWAAKSIIVKLL 72


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 128 YKIRHCYNEQTIPN 87
           +++ +CYN  T+PN
Sbjct: 30  HRVNYCYNYHTVPN 43


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 59  KTHFMFSIVHLELFAHYSN 115
           KTHF+FS +  E   H S+
Sbjct: 191 KTHFLFSQLSFECIPHLSD 209


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 157 PIKLAIIKYLTKFDIAI 107
           P+ +A+IKY  K D+A+
Sbjct: 13  PVNIAVIKYWGKRDVAL 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 867,037
Number of Sequences: 5004
Number of extensions: 13277
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)