Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P20
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   2.3  
AF016656-1|AAB66040.1|  332|Caenorhabditis elegans Hypothetical ...    26   5.3  
AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical ...    26   7.0  

>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 223 FIYLETFTHQHLYLIIIGIT*LPIKLAIIKYLTKF 119
           F +L TFTHQH   ++  +T    +L +   L +F
Sbjct: 212 FKFLYTFTHQHFVFVVAMVTPRESRLPMTTRLIRF 246


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 223 FIYLETFTHQHLYLIIIGIT*LPIKLAIIKYLTKF 119
           F +L TFTHQH   ++  +T    +L +   L +F
Sbjct: 212 FKFLYTFTHQHFVFVVAMVTPRESRLPMTTRLIRF 246


>AF016656-1|AAB66040.1|  332|Caenorhabditis elegans Hypothetical
           protein C35A11.3 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 208 TFTHQHLYLIIIGIT*LPIKLAIIKYLTKFDIAIMSKQFQMHY*KHEMCF--NFLTNQLN 35
           T T+ HL     G    PIK  +   L K+ I    K+      KH++CF  N  T   N
Sbjct: 81  TSTNGHLTSTTDGAATSPIKTEV---LNKYYIVCQQKKLNFQTPKHQICFTPNQATFSRN 137

Query: 34  NT 29
           +T
Sbjct: 138 ST 139


>AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical
           protein R155.1a protein.
          Length = 473

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 223 FIYLETFTHQHLYLIIIGIT 164
           F Y +   HQHL+ +I+G++
Sbjct: 37  FFYNKPAQHQHLFFVIVGLS 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,834,885
Number of Sequences: 27780
Number of extensions: 76870
Number of successful extensions: 196
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)