Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P20
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   4.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.8  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              20   8.4  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 139 IKYLTKFDIAIMSKQFQM 86
           I++LTK + AI  K+F++
Sbjct: 96  IEHLTKLNNAIEEKRFEL 113


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 152 KISNYQISYKIRHCYNEQTIPNALLKT*NVF*FLDQPTQQ 33
           KI+N Q +  +RH   E     A+L   N    + +PT++
Sbjct: 339 KINNSQNALVLRHVQAEAEKHAAMLYQYNFNIIISEPTER 378


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +3

Query: 72  CFQ*CIWNCLLIIAMSNFVRYLIIANFIGNY 164
           CF  CIW    ++  S    Y I     G Y
Sbjct: 70  CFLACIWQQTGVMNGSELSTYNIAGIIEGQY 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,402
Number of Sequences: 438
Number of extensions: 1109
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)