Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P19
         (324 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        19   9.9  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    19   9.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          19   9.9  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 237 VKYSRCNSY 263
           VK S CNSY
Sbjct: 244 VKLSHCNSY 252


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 88  SQLVHGSRRIHRARRGCLHR 147
           SQLV   R  HR++  C  R
Sbjct: 95  SQLVELEREFHRSKYLCRPR 114


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 19.4 bits (38), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 88  SQLVHGSRRIHRARRGCLHR 147
           SQLV   R  HR++  C  R
Sbjct: 115 SQLVELEREFHRSKYLCRPR 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,493
Number of Sequences: 336
Number of extensions: 173
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6155018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)