Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P17
         (787 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.1  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   8.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.4  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 735 GNSFSLSWGLPFDG 694
           G S  LSW  PFDG
Sbjct: 909 GRSVQLSWVAPFDG 922


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 302 KPSVSPLHTQSQAVRTATAVLSVNHAYPVS 391
           KPSVSPL +  Q   T       N A P S
Sbjct: 910 KPSVSPLTSPRQPAETHAGSPCRNSASPAS 939


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 218 QHRQTVGPGRHSLVLSAIITKLSL 147
           +H++   P +   ++ AIITK++L
Sbjct: 105 EHKKNPYPTKGEKIMLAIITKMTL 128


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 220 LAEGCYKDISTEYFWMGKREVYAEMLAETFSVSIAYS 330
           LA  C K+ +TE+ +    E+Y  +  E    S  +S
Sbjct: 25  LASDCDKNQNTEHNYTHNNEMYHSVKEEPIYESCRFS 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,302
Number of Sequences: 336
Number of extensions: 3171
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)