Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P17
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    28   1.3  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    28   1.3  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   4.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   7.0  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   9.3  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   9.3  

>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 397 ASDFKKQVQECEKTFMQYLDPGSSSTTLESEVQTSSTD 510
           A+ + K +++   + M + DP  S TTL S V  ++ +
Sbjct: 602 ATSYNKSIKDMSSSDMAFSDPAYSGTTLRSSVDLNTPE 639


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +1

Query: 385 RLRDASDFKKQVQECEKTFMQYLDPGSSSTTLESEVQTSSTDKRVKVEQ 531
           ++RD     K+V++ +KT ++ +        L+ E+Q  S  +RVK+++
Sbjct: 323 KIRDEMGIGKKVEDEQKTVVEEIPEMDEEERLDQELQDLSEAERVKLKR 371


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 741 FDGNSFSLSWGLPFDGQLR 685
           FD NS + SW L FD Q+R
Sbjct: 317 FDANSNAFSWLLRFDSQVR 335


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 326  TQSQAVRTATAVLSVNHAYPVSEMLQTLRSRCRS 427
            T S++VRT    +S    +PVSE +  L +  R+
Sbjct: 1580 TSSKSVRTKLRAISTIQRFPVSEWVSKLDTHVRN 1613


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 337 SGPNSNSRLICEPCISRLRDASDF 408
           S P+S S   C  C++RLR   +F
Sbjct: 460 SRPDSTSHASCTYCVARLRSVCNF 483


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +1

Query: 298 AETFSVSIAYSKSSGPNSNSRLICEPCISRLRDASDFKKQVQECEKTFMQYLDPGSSSTT 477
           A  F+ ++AY  +S    NS+++ +     + D +D  ++   C   F+ + DP +  +T
Sbjct: 564 AGMFATALAYCGTS----NSKIVRDVLHISVSDVNDDVRRAAVCALGFICFKDPNALIST 619

Query: 478 LE 483
           +E
Sbjct: 620 VE 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,724
Number of Sequences: 5004
Number of extensions: 52367
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)