Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P17
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151...    31   0.79 
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13...    29   4.2  
04_03_0643 + 18328807-18331969,18332560-18332627                       29   5.5  
07_03_0632 - 20112297-20116562                                         28   9.7  
07_03_0386 + 17515931-17516545,17518515-17518946                       28   9.7  
02_05_1356 + 35894170-35894397,35894475-35894663,35894768-35895319     28   9.7  

>09_04_0570 -
           18614227-18614574,18614729-18614842,18614933-18615130,
           18615290-18615463,18615546-18615752,18615886-18616180,
           18616269-18617275
          Length = 780

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 220 LAEGCYKDISTEYFWMGKREVYAEMLAETFSVSIAYS---KSSGPNSNSRLI 366
           +A+ C  D+S   FW+    V  E++A+TF ++   S   K+   N N++++
Sbjct: 326 VAKSCGNDVSRLTFWLSNTVVLREIIAQTFGITRQPSLAMKAFSTNVNAKML 377


>06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-133271,
            133389-133448,133536-133588,133671-133837,133963-134167,
            134989-135046,135225-135281,135363-135608,135938-136002,
            136090-136158,136238-136331,136467-136607,137159-137304,
            137452-138110,138222-138335,138406-138560
          Length = 1163

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 242  SL*QPSARQHRQTVGPGRHSLVLSAIITKLSL 147
            +L QP+A++H   V  G HSL L A   +LSL
Sbjct: 928  ALGQPAAQRHNAFVRHGAHSLTLDACGRRLSL 959


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 545 LSIFTCSTFTRLSVELVCTSDSKVVELLPGSKY-CIKVFSHSCTCFLKSEASRR 387
           LSIFT    +   +  +CT + K+  L+    Y  IK F+    C+ K   S R
Sbjct: 578 LSIFTKGNISCTEIVTICTQNKKLRSLICNESYRSIKQFAPVIDCWFKELPSIR 631


>07_03_0632 - 20112297-20116562
          Length = 1421

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 611  ISRLPHSPVKNRKKKQLTLWSCWQARSCPSKGRP 712
            + +LP + V     K+L + SC+Q  S P KG P
Sbjct: 1260 LRQLPSNLVTLSSLKKLNMQSCFQIHSLPLKGLP 1293


>07_03_0386 + 17515931-17516545,17518515-17518946
          Length = 348

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 283 YAEMLAETFSVSIAYSKSSGPNSNSRLICEPCIS 384
           +A ML  T  +   +SKS+GP+S +RL+ +  +S
Sbjct: 64  FATMLYSTPGLWFLWSKSAGPSSATRLLLDANVS 97


>02_05_1356 + 35894170-35894397,35894475-35894663,35894768-35895319
          Length = 322

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 228 GLLQRHFH*IFLDGKEGSLR*DVSRNL 308
           GLL+ HFH  F+ G +GS+  D S N+
Sbjct: 64  GLLRLHFHDCFVRGCDGSVLLDSSGNM 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,186,413
Number of Sequences: 37544
Number of extensions: 338348
Number of successful extensions: 994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)