Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P17
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   30   2.4  
SB_9255| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  

>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 277 EVYAE-MLAETFSVSIAYSKSSGPNSNSRLICEPCISRLRDASDFKKQVQECEKTFMQ 447
           EV  E +  E + V     +  G  +   L+C P  S++   SD K  + +C++ ++Q
Sbjct: 661 EVQCEGVTGECWCVDSRGQERPGTRTKDSLLCPPLSSQIHSHSDHKDMLTDCQRRYVQ 718


>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 412 KQVQECEKTFMQYLDPGSSSTTLESEVQTSSTDKRVKV 525
           K ++E  +  MQYLDP +    L+ E++  S +K  +V
Sbjct: 206 KDLKERGRKLMQYLDPDNKGYILKEEIEAFSIEKMKEV 243


>SB_9255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 702 FDGQLRACQQLHKVNCFFFRFFTGEC 625
           FD +++A  Q  K+   FFR FTG C
Sbjct: 41  FDSRVKARYQQLKLRALFFRIFTGYC 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,140,062
Number of Sequences: 59808
Number of extensions: 400193
Number of successful extensions: 1342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)