Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P17
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleo...    31   0.93 
AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc fi...    31   0.93 
Z49909-8|CAA90111.1|  204|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    29   5.0  
AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical ...    28   8.7  

>L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleoli
           protein 1 protein.
          Length = 851

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 551 NCLSIFTCSTFTRLSVELVCTSDSKVVELLPGSKYCIKVFSH 426
           N L  F+CS +       VCT+D   + +     +CIKVFS+
Sbjct: 709 NILQKFSCSRYLEFP-NGVCTNDKNEILISDNRAHCIKVFSY 749


>AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc
           finger protein Ncl-1 protein.
          Length = 851

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 551 NCLSIFTCSTFTRLSVELVCTSDSKVVELLPGSKYCIKVFSH 426
           N L  F+CS +       VCT+D   + +     +CIKVFS+
Sbjct: 709 NILQKFSCSRYLEFP-NGVCTNDKNEILISDNRAHCIKVFSY 749


>Z49909-8|CAA90111.1|  204|Caenorhabditis elegans Hypothetical
           protein C14A4.7a protein.
          Length = 204

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 551 NCLSIFTCSTFTRLSVELVCTSDSKVVE--LLPGSKYCIKVFSHSCTCFLKSEASRRRDM 378
           +CL+    S F  +S  L  TS+S   +  L  G+ +C  +F     C  KS    R+D+
Sbjct: 126 HCLASLLVSFFIFMSGILFITSESYSGDGVLYVGAFFCFLIFGVRIACIFKSLPQLRQDV 185

Query: 377 H 375
           H
Sbjct: 186 H 186


>Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical
           protein F42D1.2 protein.
          Length = 464

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 301 LLTSQRRLPSFPSKNIQWKCLCNSPQRDNTDKPWARVA 188
           LL  +RR  S P++  QW  L  S    NT  P  ++A
Sbjct: 26  LLVHERRFLSKPNRKDQWNVLPQSAHSKNTVNPVRKIA 63


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
 Frame = +1

Query: 271 KREVYAEMLAETFSVSIAYSKSSGPNSNSRLICEPCISRLRDASDFKKQVQEC-EKTFMQ 447
           KR  Y + L    + S  YSKS     ++ LI E C + LRD         EC E+TF  
Sbjct: 676 KRHEYDDSLRRLLNTSFEYSKSRECFHDANLIQEKC-THLRDCC---PNFDECREETFEV 731

Query: 448 YLDPGSSSTTLE-SEVQTSSTDKRVKVEQVKIERQ 549
            ++    S T   +E++     ++ K     + RQ
Sbjct: 732 EVERTIISLTATINEIKQECVKRKAKEAVKNVVRQ 766


>AC006832-1|AAO38581.1|  376|Caenorhabditis elegans Hypothetical
           protein ZK355.2b protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 280 VYAEMLAETFSVSIAYSKSSGPNSNSRLICEPCI 381
           +Y   L   FSVS AY   +  ++++ ++C  CI
Sbjct: 23  IYEYFLESIFSVSPAYENETADHNSTDVLCANCI 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,566
Number of Sequences: 27780
Number of extensions: 299764
Number of successful extensions: 866
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)