Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P16
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                  159   2e-39
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   40   0.002
SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)              34   0.11 
SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   5.3  
SB_3161| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score =  159 bits (386), Expect = 2e-39
 Identities = 76/94 (80%), Positives = 83/94 (88%), Gaps = 1/94 (1%)
 Frame = +3

Query: 183 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRT-XX 359
           F+TGPLSVLTQSVKNNTQVLINCRNN+KLL RVKAFDRHCNMVLENVKEMWTE P++   
Sbjct: 14  FNTGPLSVLTQSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKG 73

Query: 360 XXXXXAVNKDKFISKMFLRGDSVILVLRNPLATA 461
                 VNKD++I+KMFLRGDSVILVLRNPLATA
Sbjct: 74  KKKAKPVNKDRYIAKMFLRGDSVILVLRNPLATA 107


>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/50 (36%), Positives = 34/50 (68%)
 Frame = +3

Query: 195 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 344
           PL ++  S+  + ++ +  RN+++L GR+ A+D+H NM+L +V+E  T V
Sbjct: 16  PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTV 63


>SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)
          Length = 974

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +3

Query: 186 STGPLSVLTQSVKNNTQVLINCRNNKKLL----GRVKAFDRHCNMVLENVKEMWT 338
           S GP+S+L + V+   ++ +  R  K L     G + AFD+H N+ L +V E++T
Sbjct: 3   SVGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVYT 57


>SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +3

Query: 186 STGPLSVLTQSVKNNTQVLINCRNNKKLL----GRVKAFDRHCNMVLENVKEMWT 338
           S GP+S+L + V+   ++ +  R  K L     G + AFD+H N+ L +V E++T
Sbjct: 148 SVGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVYT 202


>SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1529

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 422  ITAEEHFGDEFVLVYSFALLSFASSRYLSPHFLNILQYHVTMPVESLHSTQEFLIVTAI 246
            I+ EE+FG   ++VY F     +SS Y  P      QY  T+ ++   ST   +++T +
Sbjct: 1301 ISREEYFGGYGLVVYDFTPAGNSSSGYFQP------QYKGTVSLDLNFSTAPTVVLTVV 1353


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = -1

Query: 514 PGYFIH*YLNELLNYFPAAVARGFLSTKITESPRRNILEMNLSLFTALPFFPLPVLGT 341
           P YFI   L   LN  PA     + + ++  SPR  +           P  PLP   T
Sbjct: 216 PAYFIPRVLPSPLNQLPAYTTPRYFTPRVLPSPRNQLPAYTTHRVLHSPHNPLPAYFT 273


>SB_3161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 667 LIQFQYIKISSLFIYYIELQNQR 599
           +++F YI I  LF+Y+  L NQR
Sbjct: 16  ILRFPYIPIQVLFVYFPFLDNQR 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,618,097
Number of Sequences: 59808
Number of extensions: 399767
Number of successful extensions: 803
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)