Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P15
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243...    29   2.9  
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    28   8.7  

>11_06_0760 + 27017956-27018433,27018487-27019234,27023760-27024378,
            27030755-27032440
          Length = 1176

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
 Frame = -3

Query: 675  KLPEWIVSFNL*XKDVIIITT*QAAKLRTVERLRKI*RRYKF*WLGMKLTTNYERARLQM 496
            +LP WI       K  + +T  +   LR++ +L+K+     F   G K       A L+ 
Sbjct: 936  ELPRWITQLEELTKLTLSVTVLRTDNLRSISQLKKL-FSLTFSLSGAK-PDPLSTAILEE 993

Query: 495  EKRTENNRKLV--NEKSNIRLLRIEY-LQKIINYRQKRRPNRPSCKLR 361
             K   +   LV      N++LLR    L  ++N+++K  P+    +LR
Sbjct: 994  NKNYSDGEILVPAGGFENLKLLRFSAPLLPLLNFQEKAMPSLERLELR 1041


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +3

Query: 174 SWGKIDIPSIKSKLELLPGLGSVKAKLVFV 263
           S GK+++ S+ S L L  G+G+++A  +F+
Sbjct: 768 SSGKLELSSVSSALVLAAGIGTIEALALFL 797


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,969
Number of Sequences: 37544
Number of extensions: 231170
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)