Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P15
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)             32   0.41 
SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)                  28   8.9  

>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
          Length = 773

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 593 VP*KGFEKFKEDINFNGSE*SLRRIMKELGFRWKKEQKIIG 471
           +P  G   + +  N+N  E +LR   KEL  RW K +K+IG
Sbjct: 441 LPTCGQRVYIDPSNYNDPEEALRNFAKELDKRWLKLEKVIG 481


>SB_39819| Best HMM Match : Extensin_2 (HMM E-Value=1)
          Length = 259

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = -3

Query: 525 TNYERARLQMEKRTENNRKL----VNEKSNIRLLRIEYLQKIINYRQKRRPNRPSCKLRR 358
           TNY + R     R  N RK     + + +N R  R   L    NYR++R P    C   R
Sbjct: 54  TNYRKRRCPPLTRCTNYRKRRCPPLTKCTNYRKRRCPPLTWCTNYRKRRCPPLTRCTNYR 113

Query: 357 *ALCRLITM 331
              C  +TM
Sbjct: 114 KRRCPPLTM 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,481,347
Number of Sequences: 59808
Number of extensions: 287486
Number of successful extensions: 888
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)