Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P15
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    26   0.32 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    25   0.73 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    25   0.73 
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   0.97 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   0.97 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.2  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 525 TNYERARLQMEKRTENNRKLVNEKSNIRLLRIEYLQKIINYRQK 394
           T+ ER+R + E+     RK+++  SN  +  I       NY +K
Sbjct: 300 TSKERSRDKTERERSKERKIISSLSNNYISNISNYNNNNNYNKK 343


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -2

Query: 709 RTPDKXRSGKKKVTGMDSFVQSVXKRCNHNNYITSSETPYRRKASKNLKKI 557
           R+ D+      K   + S + +  K  N+NNY  +    Y    + N KK+
Sbjct: 66  RSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -2

Query: 709 RTPDKXRSGKKKVTGMDSFVQSVXKRCNHNNYITSSETPYRRKASKNLKKI 557
           R+ D+      K   + S + +  K  N+NNY  +    Y    + N KK+
Sbjct: 66  RSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 516 ERARLQMEKRTENNRKLVNEKSNIRLLRIEYLQKIINYRQK 394
           ER+R + E+     RK+++  SN  +  I       NY +K
Sbjct: 65  ERSRDKRERERSKERKIISSLSNNYISNISNYNNNNNYNKK 105


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 516 ERARLQMEKRTENNRKLVNEKSNIRLLRIEYLQKIINYRQK 394
           ER+R + E+     RK+++  SN  +  I       NY +K
Sbjct: 65  ERSRDKRERERSKERKIISSLSNNYISNISNYNNDNNYNKK 105


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -3

Query: 723 CSPCFGLRIXKDQGRRKLP 667
           C  CF  R   D   RKLP
Sbjct: 375 CRKCFKSRTNLDPSNRKLP 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,828
Number of Sequences: 438
Number of extensions: 3343
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)