Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P13
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             398   e-111
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      30   1.8  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   5.6  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  398 bits (981), Expect = e-111
 Identities = 177/239 (74%), Positives = 206/239 (86%)
 Frame = +2

Query: 71   MARGPXXHLKRLNAPKAWMLDKLGGVYAPXPSTGPHKLRECLPLVIFLRNRLKYALTGNE 250
            MARGP  H+KRLNAPK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425  MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 251  VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 430
            V KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAK
Sbjct: 485  VKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAK 544

Query: 431  YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 610
            YKL +V+RV  G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+
Sbjct: 545  YKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNM 604

Query: 611  CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 787
             M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP
Sbjct: 605  AMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLP 663


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +2

Query: 401 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 580
           I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 581 DFIKFESGNLCM 616
            F  FE G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +1

Query: 511 PLSRPTYQSQRFHPVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPR---ETSRL 681
           PLS  +  S R+HP+  C++  + LH      L + H    +     H  P    ++S L
Sbjct: 102 PLSSSSQSSHRYHPL--CHHHHHHLHH--HHHLCHHHLSLFVCLPTQHYFPAFQVQSSPL 157

Query: 682 LRHCAHQGLHG 714
           L HC H    G
Sbjct: 158 LCHCTHDDFSG 168


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +2

Query: 227 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 394
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +1

Query: 214 EES--SEVCFDRKRSPENCE 267
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -2

Query: 291 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 175
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +2

Query: 419  EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 589
            E+A   +C++ R+   P+    LV   G   +++      I   +  Q+ +     +  +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030

Query: 590  KFESGNLCMITGGRNLGRV 646
            K +  NLC   G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,583,536
Number of Sequences: 59808
Number of extensions: 603005
Number of successful extensions: 1674
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1667
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)