Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P11
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0105 - 11893666-11895483,11895661-11896422                       29   2.9  
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482...    29   3.9  
07_03_0173 - 14721369-14721503,14722542-14722629,14723580-147237...    28   6.8  
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382...    28   6.8  

>06_02_0105 - 11893666-11895483,11895661-11896422
          Length = 859

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/45 (33%), Positives = 30/45 (66%)
 Frame = +1

Query: 568 RSGIVGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKN 702
           R+G++G+++ +E+  +  D+S S+A +   KL  KAKE +  +K+
Sbjct: 591 RNGMLGLQKIMEDTAKEADESKSIAREAQEKL-RKAKEDMDHAKS 634


>01_05_0461 +
           22446797-22447050,22447171-22447288,22447895-22448217,
           22448908-22449056,22449324-22449463,22449606-22449757,
           22449862-22450021,22450071-22450088
          Length = 437

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 285 LLNKTHNTDGEINKLSLLVYLLVFPIEVYVLLIELHHQ 172
           L  K HN  G +++L L V LL+       L + L+HQ
Sbjct: 291 LKGKGHNEKGRLSRLKLSVILLILTNVPMALYMSLYHQ 328


>07_03_0173 -
           14721369-14721503,14722542-14722629,14723580-14723752,
           14727237-14727902
          Length = 353

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 306 GLGGPKRIIMHLGPALPGXK--AWSSSSEPISL 398
           G GG  R+ + LGPA P  +  A SSS EP+ L
Sbjct: 107 GGGGGGRVAVVLGPASPARRVEASSSSGEPLEL 139


>04_04_1183 -
           31537196-31537290,31537665-31537986,31538176-31538277,
           31538826-31539071,31539385-31539506,31539588-31540344,
           31540447-31540770,31540872-31541052,31541208-31541602,
           31541877-31541942,31542225-31542377,31542593-31542691,
           31542776-31542982,31543432-31543572,31543852-31544019,
           31544302-31544395,31544479-31544585,31545140-31545274,
           31545549-31545656,31545975-31546049,31546197-31546262,
           31546500-31546556,31546678-31546702,31546809-31546889,
           31546966-31547080,31547211-31547370,31547444-31547483,
           31547599-31547780,31547905-31548234
          Length = 1650

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 227 ISWFSP*KSMCC**NFTINELGLIVTIVNFNIF 129
           ISWF   + +    +F +N + +IVT+V+F ++
Sbjct: 514 ISWFRSAQLLAALNSFILNSIPVIVTVVSFGVY 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,649,497
Number of Sequences: 37544
Number of extensions: 370142
Number of successful extensions: 984
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)