Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P11
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35811| Best HMM Match : Orthopox_C10L (HMM E-Value=5.1)             32   0.56 
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         29   3.0  
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       29   5.2  
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)                   28   9.1  
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)                     28   9.1  
SB_57117| Best HMM Match : Peptidase_C48 (HMM E-Value=8.4e-05)         28   9.1  

>SB_35811| Best HMM Match : Orthopox_C10L (HMM E-Value=5.1)
          Length = 178

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 528 RCWACSCSRSVNWSLSFPSFGS 463
           +C AC C R+VNWS   PS G+
Sbjct: 22  QCAACFCRRTVNWSAVSPSVGA 43


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
 Frame = +3

Query: 99   FDGXNXLKR-AKNVKIYDGDDKXQFIDGE----VLLTTHRLLWGKPGDIPKGLVCLSLHL 263
            F G   ++R   ++   D D+K +F D +     LLTT R+   K G   K  V LSL L
Sbjct: 1114 FKGQEFVRRLTTSLDQVDSDEKLRFADPDDKRNTLLTTKRVYVMKVGSACKENVVLSLKL 1173

Query: 264  YYVFCLE-EESGGVFGLGGPKRI 329
            + ++  + +E  G + L   KRI
Sbjct: 1174 HELYKTQHKEIEGTYYLELVKRI 1196


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 595 SIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNIS 708
           SIEEQ    D++I+   + + K  EKAK+  ++++ +S
Sbjct: 656 SIEEQVTKVDENIAKCEEQVEKCSEKAKQTQAINEKLS 693


>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 372  SSSSEPISLCETIIQRWSRYCFLQSFK*RCC--CQSL 476
            S   E   +C  ++Q  +R+C ++S++ RCC  C++L
Sbjct: 1152 SCKDESKGMCMIVVQ--ARFCTIKSYRERCCESCKNL 1186


>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
          Length = 1826

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 337  CIIILFGPPRPNTPPLSSSKQNT*YRW--RDKQTKPFGISPGFPHRSLCV 194
            C+ I   PP+P TPP   S     YR    D   +PF  S   PH S+ V
Sbjct: 1504 CVFIPPPPPKPTTPPKHGSGGFAGYRAPNLDYNGQPFNTSQ-VPHYSIRV 1552


>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 934

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 604 EQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREKQGDI 738
           ++H+A +  IS     +T+L +  +EM++ S   S  IRE+  ++
Sbjct: 87  QKHQAFEAEISAHSYAITELTDTGEEMINESHYASEDIRERLDEL 131


>SB_57117| Best HMM Match : Peptidase_C48 (HMM E-Value=8.4e-05)
          Length = 524

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 174 DGEVLLTTHRLLWGKPGDIPK---GLVCLSLHLYYVFCL 281
           DG + + T R    KPGD+P+   G+ C    L Y  CL
Sbjct: 467 DGSLDIATWRFASNKPGDLPQQANGIDCGVFLLMYARCL 505


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,608,812
Number of Sequences: 59808
Number of extensions: 443162
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)