Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P11
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-14|CAA96630.2|  383|Caenorhabditis elegans Hypothetical p...    83   2e-16
Z34801-6|CAA84329.1|  428|Caenorhabditis elegans Hypothetical pr...    31   0.86 
U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical p...    30   1.5  
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeas...    28   6.0  
DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar prot...    28   6.0  

>Z72507-14|CAA96630.2|  383|Caenorhabditis elegans Hypothetical
           protein F17C11.8 protein.
          Length = 383

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
 Frame = +1

Query: 370 GPAVVSPFHYVKLSFKDGVDTAFYKALSDAVAAKAWERQTPIDXXXXXXXXXXXXXXXXX 549
           GP   S +  ++L F+ G +  F+K   DAV  K W+R +                    
Sbjct: 96  GPVNSSHYETLRLVFRHGGEDDFFKKYEDAVRRKTWQRSSS------------GSSSSGS 143

Query: 550 XXNSKIRS-GIVGIERSIEEQHRATDQSISVAFQDLTKLMEKAKEMVSLSKNISTKIREK 726
             +S +RS GI GIER + E H+ T ++I+ AF D++KLME A+EMV+LSK+IS K+R +
Sbjct: 144 RASSNLRSVGISGIERRLAENHQKTHETITQAFDDMSKLMETAREMVALSKSISEKVRSR 203

Query: 727 QGDIS 741
           +G+IS
Sbjct: 204 KGEIS 208


>Z34801-6|CAA84329.1|  428|Caenorhabditis elegans Hypothetical
           protein F59A2.4a protein.
          Length = 428

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = -1

Query: 366 PFXLAVQDLNALLFFLDPQDQIRHHFLLLNKTHNTDGEINKLSLLVYLLVFPIEV 202
           PF + V++    L  ++P   I+HH    +++   D  + K  +  + LV  +++
Sbjct: 341 PFGMEVENHETKLVIMEPSADIKHHLFAFSRSTKADENVLKSPVFGFCLVTEVDL 395


>U23510-11|AAO38610.1|  444|Caenorhabditis elegans Hypothetical
           protein R12C12.1b protein.
          Length = 444

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 216 KPGDIPKGLVCLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPG 359
           +PGD    +  L+LH    FC+    GG  G+G P  +  HL P LPG
Sbjct: 181 RPGDYGSDVSHLNLHK--TFCIPHGGGGP-GVG-PIGVKKHLAPFLPG 224


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 216 KPGDIPKGLVCLSLHLYYVFCLEEESGGVFGLGGPKRIIMHLGPALPG 359
           +PGD    +  L+LH    FC+    GG  G+G P  +  HL P LPG
Sbjct: 716 RPGDYGSDVSHLNLHK--TFCIPHGGGGP-GVG-PIGVKKHLAPFLPG 759


>Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical
           protein F33A8.9 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -3

Query: 358 PGSAGPKCIIILFGPPRPNTPP 293
           PG  GPK   I  GPP P  PP
Sbjct: 222 PGPTGPKNFYITSGPPGPPGPP 243


>U53332-5|AAK31535.2|  821|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 35 protein.
          Length = 821

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 348 QDLNALLFFLDPQDQIRHHFLLLNKTHNTDGEINKLSLLVYLLVFPIEVYVLLIE 184
           Q+L A L  L   D +   FLLLN    T GE  +  L   L     E+Y L+++
Sbjct: 505 QNLVARLLHLIRADDVDSQFLLLNSARKTLGEGGRHRLRYTLPPIIFELYRLVLQ 559


>DQ178636-1|ABD75715.1|  826|Caenorhabditis elegans vacuolar protein
           sorting factor protein.
          Length = 826

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 348 QDLNALLFFLDPQDQIRHHFLLLNKTHNTDGEINKLSLLVYLLVFPIEVYVLLIE 184
           Q+L A L  L   D +   FLLLN    T GE  +  L   L     E+Y L+++
Sbjct: 510 QNLVARLLHLIRADDVDSQFLLLNSARKTLGEGGRHRLRYTLPPIIFELYRLVLQ 564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,468,852
Number of Sequences: 27780
Number of extensions: 336202
Number of successful extensions: 848
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)