Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P09
         (727 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3KAX2 Cluster: UspA; n=1; Pseudomonas fluorescens PfO-...    35   1.8  
UniRef50_Q0RKI1 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_Q7MAP1 Cluster: SENSOR KINASE OF TWO-COMPONENT REGULATO...    34   4.1  
UniRef50_A6LN06 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q1ZYM1 Cluster: Histidine kinase SHK278; n=1; Striga as...    33   7.2  
UniRef50_A3HJM9 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  
UniRef50_A1ZK20 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_Q3KAX2 Cluster: UspA; n=1; Pseudomonas fluorescens
           PfO-1|Rep: UspA - Pseudomonas fluorescens (strain PfO-1)
          Length = 307

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 416 HVVEATPELGPKLAIKDTELMKLAKEIYERNMDEPTLETLPTHLRIL---GYVRP 571
           HV+E   +  P L IKDT  +      + R +D   L   P HL ++   G+ RP
Sbjct: 100 HVLEYVQDFHPDLVIKDTHYVPALDRAFHRPLDWRLLRECPAHLHLVTSAGHARP 154


>UniRef50_Q0RKI1 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 169

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 197 AKLEGNWMDPRGGTQDREWTDEEIENFIKTTMKSLRGQS 313
           A +   W + R   Q+REW DE+ E F + T++ +  +S
Sbjct: 76  AGMSEQWANQRAAEQEREWEDEQFERFHQETVRQVDAES 114


>UniRef50_Q7MAP1 Cluster: SENSOR KINASE OF TWO-COMPONENT REGULATORY
           SYSTEM ,; n=2; Wolinella succinogenes|Rep: SENSOR KINASE
           OF TWO-COMPONENT REGULATORY SYSTEM , - Wolinella
           succinogenes
          Length = 390

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 254 TDEEIENFIKTTMKSLRGQSTYFNDYCAHLSPEFKTRPFKPRDKKLKPCAL 406
           T E+  +F + ++++L   S    D+ + + P+FK R F P +  L+  AL
Sbjct: 199 TPEKFADFARGSIQTLHHLSNTIGDFYSFIKPDFKKREFSPYEALLESIAL 249


>UniRef50_A6LN06 Cluster: Putative uncharacterized protein; n=1;
           Thermosipho melanesiensis BI429|Rep: Putative
           uncharacterized protein - Thermosipho melanesiensis
           BI429
          Length = 241

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 134 FDEYRQHPIKKTKICRPEERWAKLEGNWMDPRGG-TQDREWTDEEIENFIKTTMKSLRGQ 310
           + EY Q  IK  K   P++   K    W + R   TQ + WT E+I+ +I+T  K L+G+
Sbjct: 144 YQEY-QDVIKAYKWSGPQD---KRTTKWCENRYKLTQKKPWTYEQIQKYIQTNPKKLKGK 199

Query: 311 STYFNDYCAHLSPEFKTR 364
                D+   L P  + R
Sbjct: 200 EIR-ADHGTFLHPHIQCR 216


>UniRef50_Q1ZYM1 Cluster: Histidine kinase SHK278; n=1; Striga
           asiatica|Rep: Histidine kinase SHK278 - Striga asiatica
           (Asiatic witchweed) (Striga lutea)
          Length = 1002

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = +2

Query: 422 VEATPELGPKLAIKDTELMKLAKEIYERNMDE 517
           VE  PE+GP L  K  +++ + +E++ERN++E
Sbjct: 748 VEVVPEVGPGLKKKPVQIVFVEEEMWERNVEE 779


>UniRef50_A3HJM9 Cluster: Putative uncharacterized protein; n=1;
           Pseudomonas putida GB-1|Rep: Putative uncharacterized
           protein - Pseudomonas putida (strain GB-1)
          Length = 162

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 563 VRPCLYRTGLSDYXGGVARLAYELVRDDRIPRYRAHNGCRPRWGLPPD 706
           +R  LYR G  DY GG+ +LA+++  +    + + H+    RW  P +
Sbjct: 16  LRQALYRAG-RDYRGGITKLAFDMGLEVDTLQKKLHHNEERRWPTPDE 62


>UniRef50_A1ZK20 Cluster: Putative uncharacterized protein; n=1;
           Microscilla marina ATCC 23134|Rep: Putative
           uncharacterized protein - Microscilla marina ATCC 23134
          Length = 1234

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +2

Query: 260 EEIENFIKTTMKSLRGQSTYFNDYCAHLSPEFKTRPFKPRDKKL 391
           E  EN+  T +K   G S+ FN  C  L   F T PFK R+  L
Sbjct: 379 ELFENYFSTFIKDEEGFSSDFNIKCLGLIAFFYTLPFKDRETML 422


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,904,358
Number of Sequences: 1657284
Number of extensions: 11947717
Number of successful extensions: 33030
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33023
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)