Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P09
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa...    27   2.1  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    27   3.6  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   8.3  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   8.3  

>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
           Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +2

Query: 356 KTRPFKPRDKKLKPCALKGDHVVEATPELGPKLAIKDTELMKLAKEIYERNMDEPTLET 532
           KTR    RDK LK CA   +H++    +L P +    + +  +A ++ E    EPT ET
Sbjct: 131 KTRLVMRRDKTLKVCA---NHLLMPEMKLTPNVGSDRSWVWTVAADVSE---GEPTAET 183


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 164 KTKICRPEERWAKLEGNWMDPRGGTQDREWTDEE 265
           + KI   E    + EG W+DP    Q  E  DE+
Sbjct: 366 EVKISFHERIRLEFEGEWLDPNDQVQSTELEDED 399


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 254 TDEEIENFIKTTMKSLRGQSTYFNDYC 334
           TDE+I    KT++K L  QST  +  C
Sbjct: 514 TDEDIAEIEKTSVKLLEAQSTPADTSC 540


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 213  FPSNFAHLSSGRHIFVFLIGC*RYSSKYSVKNDXF 109
            FP NF H     H+F+  + C   +  ++  +D +
Sbjct: 995  FPPNFIHSLDATHMFMTCLKCSEQNINFAAVHDSY 1029


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,207
Number of Sequences: 5004
Number of extensions: 47747
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)