Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P09
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)                     30   1.7  
SB_5226| Best HMM Match : Zot (HMM E-Value=4.1)                        30   1.7  
SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63)                29   2.9  
SB_8480| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_49170| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_19570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             29   5.1  
SB_30892| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       28   8.9  
SB_50645| Best HMM Match : Syndecan (HMM E-Value=0.02)                 28   8.9  
SB_20717| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_18384| Best HMM Match : HSBP1 (HMM E-Value=1.5)
          Length = 1072

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = +2

Query: 149  QHPIKKTKICRPEERWAKLEGNWMDPRGGTQDREWTDEEIEN---FIKTTMKSLRGQSTY 319
            QH +K   +C    R  KL     D      +R    E+++    + +T  K+LR +  Y
Sbjct: 960  QHELKSLPLCTQLVR--KLPAEERDEWVRQVERGQVQEDLKGLAEWAQTRSKTLRMRERY 1017

Query: 320  FNDYCAHLSPEFKTRPFKPRDKKLKPCAL 406
             N       P+ K RP K   +  KPC L
Sbjct: 1018 -NKQPTAKCPQLKVRPSKGDTRGTKPCTL 1045


>SB_5226| Best HMM Match : Zot (HMM E-Value=4.1)
          Length = 211

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = +2

Query: 149 QHPIKKTKICRPEERWAKLEGNWMDPRGGTQDREWTDEEIEN---FIKTTMKSLRGQSTY 319
           QH +K   +C    R  KL     D      +R    E+++    + +T  K+LR +  Y
Sbjct: 99  QHELKSLPLCTQLVR--KLPAEERDEWVRQVERGQVQEDLKGLAEWAQTRSKTLRMRERY 156

Query: 320 FNDYCAHLSPEFKTRPFKPRDKKLKPCAL 406
            N       P+ K RP K   +  KPC L
Sbjct: 157 -NKQPTAKCPQLKVRPSKGDTRGTKPCTL 184


>SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 233 GTQDREWTDEEIENFIKTTMKSLRGQS 313
           G +DREW D +IEN  +T  + + GQS
Sbjct: 49  GQKDREWKDSQIENG-RTERQRMEGQS 74


>SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63)
          Length = 936

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 134 FDEYRQHPIKKTKICRPEERWAKLEGNWMDPRGGTQDREWTDEEIENFIK 283
           FD+Y+    +K +  +  E++ +  G+W   R   QD  W +EE  N ++
Sbjct: 532 FDDYKDCLFEKIRHDKALEKYQQAMGDWQKKRQEYQD--WLEEEYNNKLR 579


>SB_8480| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 404 LKGDHVVEATPELGPKLAIKDTELMKLAKEIY 499
           + G H+++   +L P+L++  TEL ++ +E Y
Sbjct: 88  ISGQHIMKMNFDLAPRLSVPHTELNRVVQEWY 119


>SB_49170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +2

Query: 437 ELGPKLAIKDTELMKLAKEIYERNMDEPTLETLPTHLRILGYVRPCLYRTGLS 595
           E+  +LA++ + L  L  +++ +NM  PTL    +   + G V+P LY+  +S
Sbjct: 325 EIEERLAVEASPL--LPNQLFLQNMKAPTLNRGISGKPVSGQVKPALYQFNVS 375


>SB_19570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +2

Query: 440 LGPKLAIKDTELMKLAKEIYERNMDEPTLETLPTHLRILGYVRPCLYRTGLSDYXGGVAR 619
           +GP + I+     KL K+  + ++ EP   +LPT     G  R   YRT L D    + R
Sbjct: 96  IGPPIEIRSDGEEKLVKDEIKHHLPEPAETSLPTDANQEG--RRFRYRTTLVDGRPPLQR 153

Query: 620 LAYELVRD 643
            A   V D
Sbjct: 154 RARPPVLD 161


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +2

Query: 440 LGPKLAIKDTELMKLAKEIYERNMDEPTLETLPTHLRILGYVRPCLYRTGLSDYXGGVAR 619
           +GP + I+     KL K+  + ++ EP   +LPT     G  R   YRT L D    + R
Sbjct: 96  IGPPIEIRSDGEEKLVKDEIKHHLPEPAETSLPTDANQEG--RRFRYRTTLVDGRPPLQR 153

Query: 620 LAYELVRD 643
            A   V D
Sbjct: 154 RARPPVLD 161


>SB_30892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 233 GTQDREWTDEEIENFIKTTMKSLRGQS 313
           G +DREW D + EN  +T  +++ GQS
Sbjct: 72  GQKDREWKDRKAENG-RTERQTMEGQS 97


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
 Frame = +2

Query: 194 WAKLEGNWMDPRGGTQDREWTDEEIENFIKTTMKSLRGQSTYFNDY--CAHLSPEFKT-- 361
           W K   +WM+    T D E  ++ + N  KT  K  +    +F +   C  ++ E +   
Sbjct: 129 WQKWHDSWMNDPLTTIDAEQLEQNVNNSFKTIFKCYK----HFKEIPACQQVAYEVREKI 184

Query: 362 ---RPFKPRDKKLKPCALKGDHVVEATPELG 445
              +P+ P  + L+   ++  H  + + ELG
Sbjct: 185 EAFKPYIPLIQGLRNPGMRSRHWEQLSKELG 215


>SB_50645| Best HMM Match : Syndecan (HMM E-Value=0.02)
          Length = 226

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 344 SPEFKTRPFKPRDKKLKPCALKGDHVVEATPELGPKLAIKDTELMKLAKE--IYERNMDE 517
           +PE  TR  KP+D+K K   ++ +  VE T     K   K TE +K   E  + E + + 
Sbjct: 92  APEVSTRKPKPKDRKTKEPKVETEE-VEITTAEPVKPTEKPTEFVKPTTEDDVMETDPEN 150

Query: 518 P 520
           P
Sbjct: 151 P 151


>SB_20717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 398 CALKGDHVVEATPELGPKLAIKDTELMKLAKEIYERNMDEPTLETLPTH 544
           C LKG H+      L     +  T +++L +   +RN+D+ TL T+P H
Sbjct: 238 CKLKGLHI-----NLRTAATVNLTSMLELLR--VKRNVDDRTLHTVPAH 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,954,079
Number of Sequences: 59808
Number of extensions: 369621
Number of successful extensions: 998
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)