Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P09
         (727 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein ...    29   4.9  
X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein ...    29   4.9  
AY052070-1|AAK93494.1|  854|Drosophila melanogaster SD02572p pro...    29   6.4  

>X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein
            protein.
          Length = 1332

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 30/114 (26%), Positives = 44/114 (38%)
 Frame = +2

Query: 197  AKLEGNWMDPRGGTQDREWTDEEIENFIKTTMKSLRGQSTYFNDYCAHLSPEFKTRPFKP 376
            +K EGN         D E TD ++    K   K+L    T   DY      E   +P K 
Sbjct: 945  SKTEGNVKSKELIEPDVEQTDVQVLKK-KKLKKTLVTNDTVAQDY--ETLEEETIKPVKK 1001

Query: 377  RDKKLKPCALKGDHVVEATPELGPKLAIKDTELMKLAKEIYERNMDEPTLETLP 538
            +  + K   +     +E T   GP   +   E  K+ K+  +   D PT+E  P
Sbjct: 1002 KIVRKKSSVIL--EKIEDTENKGPADEVVSVEAKKIIKKKAKPACDNPTVEEYP 1053


>X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein
            protein.
          Length = 1332

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 30/114 (26%), Positives = 44/114 (38%)
 Frame = +2

Query: 197  AKLEGNWMDPRGGTQDREWTDEEIENFIKTTMKSLRGQSTYFNDYCAHLSPEFKTRPFKP 376
            +K EGN         D E TD ++    K   K+L    T   DY      E   +P K 
Sbjct: 945  SKTEGNVKSKELIEPDVEQTDVQVLKK-KKLKKTLVTNDTVAQDY--ETLEEETIKPVKK 1001

Query: 377  RDKKLKPCALKGDHVVEATPELGPKLAIKDTELMKLAKEIYERNMDEPTLETLP 538
            +  + K   +     +E T   GP   +   E  K+ K+  +   D PT+E  P
Sbjct: 1002 KIVRKKSSVIL--EKIEDTENKGPADEVVSVEAKKIIKKKAKPACDNPTVEEYP 1053


>AY052070-1|AAK93494.1|  854|Drosophila melanogaster SD02572p
           protein.
          Length = 854

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 266 IENFIKTTMKSLRGQSTYFNDYCAHLSPEFKTRPFKPR-DKKLKPCALKGDHVVEATPEL 442
           +ENF+    K +     Y  D+CA   P +K     PR  K L+   LK         EL
Sbjct: 761 VENFLLPDSKLMFDFYCYLYDWCAEFIPTWKRLEVDPRAAKALQKKRLKKQRQAARKVEL 820

Query: 443 GPKLAIKDTELMK 481
              +A  + E+++
Sbjct: 821 REAIADPNAEMVE 833


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,591,164
Number of Sequences: 53049
Number of extensions: 541700
Number of successful extensions: 1452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)