Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P07
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    26   6.5  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    26   6.5  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    26   6.5  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   8.6  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   8.6  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
 Frame = +2

Query: 227 MFLPSVKIQHKLIHTKPTCNG-------SVCHLEDRPRHVKRESREITELPHSSLRRCYS 385
           +F  +  I    IH +PTC G       S   L+   R +   S  IT +P +    C +
Sbjct: 545 LFASTTNIMSTFIHNEPTCYGIIHEKKLSHAFLDAVNRKILNSSDAITSIPLAFGAICLN 604

Query: 386 KQHGRPEIDRRKQPXXXXXXXXXTECKGLDRSE 484
            Q     +++   P           CK L  S+
Sbjct: 605 SQGFDLFLEKNPIPQLFSIFTSLNHCKSLISSD 637


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 509 VHNILDVDKDGLISYNDFLLFAERFKSLGHLDAK 610
           V N+ D DK+G I + +F+  A    S G L+ K
Sbjct: 68  VFNVFDADKNGYIDFKEFIC-ALSVTSRGELNDK 100


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 505 THLAAPELRPVQPLTLGVRVGIRFRIGLFPSVYFRSA--MLFAVTT 374
           TH+   +LRP       +  G  F +  FP+ +F S   + FA+ T
Sbjct: 204 THIILRDLRPAGSKKRVIPTGYGFNLVSFPNYFFESLGWLFFALLT 249


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 636 MMSVNSFACFASRWPRDLNLS-ANSK-KSLYEISPSLSTSKM 517
           + SV +    A  WP+ LNLS AN++  SL ++ P    +K+
Sbjct: 226 LQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKL 267


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 444 PTLTPSVRGWTGLSSGAARCV 506
           PTL P V GW G+ +G  R +
Sbjct: 239 PTLGPLVGGWIGVGTGDFRWI 259


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -1

Query: 630 SVNSFACFA-SRWPRDLNLS---ANSKKSLYEISPS 535
           +V +F  F+ S +PR  N     + S KSLYE+SPS
Sbjct: 299 NVTTFRRFSQSSYPRRSNYRRRISTSSKSLYELSPS 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,614
Number of Sequences: 5004
Number of extensions: 48384
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)