Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P07
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592...    30   2.2  
05_01_0450 + 3577928-3579526,3579695-3579832                           30   2.2  
12_02_0343 - 17748882-17753396                                         29   2.9  
06_03_0899 - 25776159-25776797,25776898-25777806,25779425-257795...    29   2.9  
05_04_0126 + 18252594-18256922                                         28   6.8  
01_06_0369 - 28794283-28794427,28794865-28795874                       28   6.8  
04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595...    28   9.0  
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600           28   9.0  

>07_03_0044 -
           12758606-12758676,12758765-12758860,12759197-12759299,
           12759379-12759474,12759537-12759603,12759682-12759749,
           12759898-12759973,12760112-12760197,12760285-12760361,
           12761461-12761533,12761627-12761875,12761997-12762089,
           12762218-12762292,12762661-12762716,12763473-12763513,
           12763907-12764001,12764085-12764158,12765052-12765145,
           12765484-12765519
          Length = 541

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 494 RKMRTVHNILDVDKDGLISY 553
           RK+R++HN LD ++ GL+ Y
Sbjct: 11  RKLRSLHNALDCERSGLVRY 30


>05_01_0450 + 3577928-3579526,3579695-3579832
          Length = 578

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +2

Query: 518 ILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIK 640
           +LD + DG +S ++F LF +R K    L+ K   E+ +I+K
Sbjct: 513 LLDANSDGSLSSDEFALFQKRVKLKTKLENKD-DEYKEILK 552


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 277  NVQRIGVSPGRQAATRQT*IAGDHRVASQLIKTLLQQTTWPTGNRQKETARFGI 438
            NV R+GV+  R   T ++ ++     A++ + T+LQQ T      +  TA  G+
Sbjct: 1135 NVARLGVAEQRTITTPESSLSPSANKAAKTLTTILQQQTGEAEEMETATADDGL 1188


>06_03_0899 -
           25776159-25776797,25776898-25777806,25779425-25779592,
           25779703-25779890,25779993-25780137,25780566-25780775
          Length = 752

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +2

Query: 494 RKMRTVHNILDVDKDGLISYNDFL--LFAERFKSLGHLDAKQAKEFTDIIKMTWEQ---- 655
           RKMR  H IL +   GL+  N  L   F ++   L   + K ++E + II  T+E+    
Sbjct: 177 RKMREEHKILKLMLGGLLEQNGVLKRAFLKQHNRLNDYEKKMSQERSQIID-TYEKEIKA 235

Query: 656 -QWGTIXPYNFVTVEQYL 706
            Q+ T        +EQYL
Sbjct: 236 LQFATTAKLKQRNMEQYL 253


>05_04_0126 + 18252594-18256922
          Length = 1442

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 334 IAGDHRVASQLIKTLLQQTTWPTGNRQKETAR 429
           I  +H++A  +++ LL+ +  P GN  KE A+
Sbjct: 451 ILNNHKIALDIVRELLRWSQLPEGNSVKELAK 482


>01_06_0369 - 28794283-28794427,28794865-28795874
          Length = 384

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 491 RRKMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTD 631
           ++KM       D+D D  +S +DFL++  + K +G +D K     +D
Sbjct: 318 QKKMDNEPLAADLDHDASVSKSDFLIY--KLKEIGKIDDKDIAMISD 362


>04_04_1224 +
           31858110-31858338,31859180-31859301,31859398-31859507,
           31859661-31859725,31859940-31860004,31860387-31860632,
           31861212-31861313,31861484-31861534,31862015-31862105,
           31862777-31862841
          Length = 381

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 263 IHTKPTCNGSVCHLEDRPRHVKRESREITELPHSSLRRC 379
           +HTK  C   VC       +VK ++  +   P   +++C
Sbjct: 121 LHTKDVCRTPVCDTVAASAYVKPQTSHVNVFPLKEVKKC 159


>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
          Length = 274

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 592 RPPRREAGEGIHRHHQDDMGATMGHHXSVQFRDGGTILGGHASRPQRQXSQ 744
           R PRR  G G H  H +  G   G   + ++RD GT + G   R + + +Q
Sbjct: 72  RRPRR--GSGGHAPHPESGGGGGGGGGAREWRDVGTTMRGGGGRGRGKSAQ 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,634,398
Number of Sequences: 37544
Number of extensions: 372462
Number of successful extensions: 961
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)