Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P07
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    31   0.99 
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_26865| Best HMM Match : efhand (HMM E-Value=7.5e-08)                31   0.99 
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)                     30   2.3  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_56635| Best HMM Match : rve (HMM E-Value=0.0073)                    29   5.3  
SB_35093| Best HMM Match : Nif11 (HMM E-Value=7.3)                     28   7.0  
SB_12721| Best HMM Match : Patatin (HMM E-Value=8.1e-10)               28   7.0  
SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +2

Query: 464  KGLDRSEFWRRKMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKE 622
            K  +   F  R  RTV ++LD D  G IS  +F    ERF  L +L+ K  +E
Sbjct: 1456 KDKEEKHFIHRHSRTVFDLLDEDDSGNISAYEF----ERFGFLFNLEGKAIRE 1504


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = +2

Query: 296  CHLEDRP-RHVKRESREITELPHSSLRRCYSKQHGRPEIDRRKQPXXXXXXXXXTECKGL 472
            C   DR  RH  RESR+I        R C       P IDR              EC+G+
Sbjct: 1565 CRDFDRECRHFDRESRDIDRESRGIDRECRGIDRECPGIDRECLGINRECLGIDRECRGI 1624

Query: 473  DR 478
            DR
Sbjct: 1625 DR 1626


>SB_26865| Best HMM Match : efhand (HMM E-Value=7.5e-08)
          Length = 151

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +2

Query: 464 KGLDRSEFWRRKMRTVHNILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKE 622
           K  +   F  R  RTV ++LD D  G IS  +F    ERF  L +L+ K  +E
Sbjct: 73  KDKEEKHFIHRHSRTVFDLLDEDDSGNISAYEF----ERFGFLFNLEGKAIRE 121


>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
          Length = 1381

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 239  SVKIQHKLIHTKPTCNGSVCHLEDRPRHVKRESREITELPHSSLRRCYSKQHGRPEIDR- 415
            +V+I+ K+   K T    V   E R   +K   +E TE    +L RC     G PE++  
Sbjct: 1107 NVQIRDKMRKEKKTYKSQVKSFEQRIEELKENLQE-TEEEKQALIRCMQMNGGGPELETP 1165

Query: 416  -RKQP 427
             +K+P
Sbjct: 1166 VKKEP 1170


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 473  DRSEFWRRKMRTVHNILDVDKDGLISYNDFLLFA--ERF-KSLGHLDAKQAKEFTD 631
            +R E   R    V N +D DKDG +S ++FL  +  E F K  G    +  + +TD
Sbjct: 995  ERDEEISRMREHVMNEIDKDKDGFVSQDEFLQSSKGEEFDKDDGWKSVEDERPYTD 1050


>SB_56635| Best HMM Match : rve (HMM E-Value=0.0073)
          Length = 267

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = -2

Query: 494 GARTQTGPAPYTRCQSRNQIPNRAVSFCLF 405
           G  TQT P P T      QIPNR  S  LF
Sbjct: 58  GGYTQTPPPPTTYAHFSEQIPNRIHSDLLF 87


>SB_35093| Best HMM Match : Nif11 (HMM E-Value=7.3)
          Length = 188

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 494 GARTQTGPAPYTRCQSRNQIPNR 426
           G  TQT P P T  Q   QIPNR
Sbjct: 83  GGYTQTPPPPTTYAQFSEQIPNR 105


>SB_12721| Best HMM Match : Patatin (HMM E-Value=8.1e-10)
          Length = 251

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 25  FHQIARCCXVRFALSPRRVRWXSXCFRLSXTR 120
           F  +  C  V++ALSP   R+ + C+RL+ T+
Sbjct: 2   FSNLQAC--VKYALSPASKRFSTSCYRLTLTK 31


>SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 422 VSFCLFPVGHVVCCNNVLMSCEA 354
           ++  L P GH+VCC    M+ EA
Sbjct: 154 INAVLIPCGHMVCCEQCAMNLEA 176


>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 638

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 470 APYTRCQSRNQIPNRAVSFCLFPVGHVVCC 381
           AP  RCQS  +  + +V  C F VG  VCC
Sbjct: 599 APEFRCQSPARNVSSSVELCSF-VGGAVCC 627


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,226,058
Number of Sequences: 59808
Number of extensions: 421807
Number of successful extensions: 1398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)