Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P07
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   6.1  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   6.1  
AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z81487-1|CAB03995.2|  288|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z78540-3|CAB01735.2|  482|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 654  CSHVILMMSVNSFACFASRWPRDLNLSANSKKSLYEISPSL 532
            CSH+ L+ + N+F C   + P    L A+ KK + +  P L
Sbjct: 1756 CSHLCLLNNKNTFTC---KCPMGEKLDASGKKCIDDAKPFL 1793


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 654  CSHVILMMSVNSFACFASRWPRDLNLSANSKKSLYEISPSL 532
            CSH+ L+ + N+F C   + P    L A+ KK + +  P L
Sbjct: 1756 CSHLCLLNNKNTFTC---KCPMGEKLDASGKKCIDDAKPFL 1793


>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 278 TCNGSVCHLEDRPRHVKRESREITELPHSSLRRCYSKQH-GRPEIDR 415
           TC  S C+  D  R +  +  E  E+ +S    C  K H  RP++ +
Sbjct: 160 TCMNSTCNAPDLDRRMADDMCEAIEMKNSPFMACQFKIHKERPDLSK 206


>Z81487-1|CAB03995.2|  288|Caenorhabditis elegans Hypothetical
           protein C54E10.2 protein.
          Length = 288

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 521 LDVDKDGLISYNDFLLFAER 580
           LD D+DGL++Y+D + F ++
Sbjct: 244 LDCDRDGLVTYDDMIRFFQK 263


>Z78540-3|CAB01735.2|  482|Caenorhabditis elegans Hypothetical
           protein C33G3.5 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 515 NILDVDKDGLISYNDFLLFAERFKSLGHLDAKQAKEFTDIIKM 643
           ++LD  K+G +S +D L   ++ +++   D    KEF +++ +
Sbjct: 199 HLLDSHKNGTLSTSDTLELNKKLQNIAFFDRPDDKEFREMVDL 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,099,688
Number of Sequences: 27780
Number of extensions: 293459
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)