Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P05
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    24   1.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.3  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       23   2.3  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.3  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.3  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.2  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
 Frame = -2

Query: 462 SPKERHRPTKLRDRNPSERHEQQRLSGLQERSQRNEPRA-------RPPQSGPERECVQE 304
           SP E+H   + RD  P + ++ Q L        +N+ R        RP +    R     
Sbjct: 209 SPPEKHLRLR-RDTAPPQWYQHQPLLFTYTDDGKNQQRTGTELTKMRPKRQSSRRHRKNL 267

Query: 303 RGPCARRR 280
           + PC RR+
Sbjct: 268 KDPCRRRQ 275


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 205 PTTLSPTRVSCWLLTS 158
           PTT+    ++CW LTS
Sbjct: 313 PTTVMSPTINCWSLTS 328


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -2

Query: 429 RDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERG 298
           R+R   ERH+QQ+    Q+  Q+           P +  + + G
Sbjct: 77  REREEQERHKQQQQEKQQKIEQQTHSSIHQHHHDPMKMSLDKSG 120


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -2

Query: 429 RDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERG 298
           R+R   ERH+QQ+    Q+  Q+           P +  + + G
Sbjct: 228 REREEQERHKQQQQEKQQKIEQQTHSSIHQHHHDPMKMSLDKSG 271


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -2

Query: 429 RDRNPSERHEQQRLSGLQERSQRNEPRARPPQSGPERECVQERG 298
           R+R   ERH+QQ+    Q+  Q+           P +  + + G
Sbjct: 287 REREEQERHKQQQQEKQQKIEQQTHSSIHQHHHDPMKMSLDKSG 330


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 441 PTKLRDRNPSERHEQQRL 388
           PTK R   P+ RH Q  +
Sbjct: 370 PTKTRTNLPTHRHPQDEI 387


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 250 STVRLVPSDSKREYCPTTLSPTR 182
           S +   P D    Y P +LS TR
Sbjct: 11  SLISNTPKDMNARYLPPSLSDTR 33


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 124 ASPTACQTPTPATSRA 171
           ASPT    PTP++ R+
Sbjct: 53  ASPTPGDVPTPSSPRS 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,045
Number of Sequences: 336
Number of extensions: 1800
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)