Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_P03
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               64   2e-10
SB_46690| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  

>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 8/158 (5%)
 Frame = +2

Query: 281 VLSVMLLFPISDAYENHKKTEE-NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN 457
           V   + LF   +   + +K +  +E   + +E+  +IF+ +Q I N+C T AL+ SV  N
Sbjct: 27  VYGFIFLFKWIEERRSRRKIQHIDESFVENEEIVNDIFFAQQVIPNSCATHALL-SVLLN 85

Query: 458 TDIIELSDGHMQKFLNEAKGLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAEDPVNH 637
              I+L + ++ K  + +K  +   +G ++     +  +H + A+      P   + ++ 
Sbjct: 86  CPHIDLGE-NVSKLKDFSKNFNPENKGYVIGNLPELAMSHNKFARPEPKLLPEKTNSISS 144

Query: 638 -------HFISFVHKDGALYELDGRKAFPVNHGPTSQE 730
                  HF+S+V   G L+ELDG K +P++HGP  ++
Sbjct: 145 ARALEAFHFVSYVPIKGRLFELDGLKPYPIDHGPWGEQ 182


>SB_46690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 585 WLKKAKQIHQVLKIPSTIILSALSIKMEHCM 677
           W++KAKQ++  L  P  I +++ +I++ H +
Sbjct: 50  WIEKAKQVYSTLSSPKKIFIASDNIEVIHSL 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,287,407
Number of Sequences: 59808
Number of extensions: 482826
Number of successful extensions: 1116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)